Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19785

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS19780 and ABIE41_RS19785 are separated by 207 nucleotidesABIE41_RS19785 and ABIE41_RS19790 are separated by 194 nucleotides ABIE41_RS19780: ABIE41_RS19780 - serine hydroxymethyltransferase, at 4,059,280 to 4,060,581 _RS19780 ABIE41_RS19785: ABIE41_RS19785 - Na+/H+ antiporter NhaA, at 4,060,789 to 4,061,994 _RS19785 ABIE41_RS19790: ABIE41_RS19790 - cupin domain-containing protein, at 4,062,189 to 4,062,575 _RS19790 Position (kb) 4060 4061 4062Strain fitness (log2 ratio) -1 0 1 2at 4060.687 kb on - strandat 4060.687 kb on - strandat 4060.954 kb on + strand, within ABIE41_RS19785at 4060.954 kb on + strand, within ABIE41_RS19785at 4060.954 kb on + strand, within ABIE41_RS19785at 4060.954 kb on + strand, within ABIE41_RS19785at 4060.955 kb on - strand, within ABIE41_RS19785at 4060.955 kb on - strand, within ABIE41_RS19785at 4060.955 kb on - strand, within ABIE41_RS19785at 4060.955 kb on - strand, within ABIE41_RS19785at 4060.955 kb on - strand, within ABIE41_RS19785at 4061.131 kb on + strand, within ABIE41_RS19785at 4061.131 kb on + strand, within ABIE41_RS19785at 4061.131 kb on + strand, within ABIE41_RS19785at 4061.131 kb on + strand, within ABIE41_RS19785at 4061.320 kb on + strand, within ABIE41_RS19785at 4061.321 kb on - strand, within ABIE41_RS19785at 4061.419 kb on + strand, within ABIE41_RS19785at 4061.785 kb on + strand, within ABIE41_RS19785at 4061.786 kb on - strand, within ABIE41_RS19785at 4061.786 kb on - strand, within ABIE41_RS19785at 4061.786 kb on - strand, within ABIE41_RS19785at 4061.797 kb on + strand, within ABIE41_RS19785at 4061.797 kb on + strand, within ABIE41_RS19785at 4062.040 kb on + strandat 4062.040 kb on + strandat 4062.040 kb on + strandat 4062.111 kb on + strandat 4062.112 kb on - strandat 4062.186 kb on + strandat 4062.186 kb on + strandat 4062.186 kb on + strandat 4062.197 kb on - strandat 4062.262 kb on + strand, within ABIE41_RS19790at 4062.263 kb on - strand, within ABIE41_RS19790at 4062.298 kb on + strand, within ABIE41_RS19790at 4062.299 kb on - strand, within ABIE41_RS19790at 4062.501 kb on + strand, within ABIE41_RS19790at 4062.546 kb on - strandat 4062.984 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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4,060,687 - +0.3
4,060,687 - +0.7
4,060,954 + ABIE41_RS19785 0.14 -0.0
4,060,954 + ABIE41_RS19785 0.14 +0.2
4,060,954 + ABIE41_RS19785 0.14 -0.4
4,060,954 + ABIE41_RS19785 0.14 -0.6
4,060,955 - ABIE41_RS19785 0.14 -0.8
4,060,955 - ABIE41_RS19785 0.14 -0.6
4,060,955 - ABIE41_RS19785 0.14 -1.7
4,060,955 - ABIE41_RS19785 0.14 -0.7
4,060,955 - ABIE41_RS19785 0.14 +1.0
4,061,131 + ABIE41_RS19785 0.28 -0.1
4,061,131 + ABIE41_RS19785 0.28 -1.1
4,061,131 + ABIE41_RS19785 0.28 +0.7
4,061,131 + ABIE41_RS19785 0.28 +1.2
4,061,320 + ABIE41_RS19785 0.44 +0.5
4,061,321 - ABIE41_RS19785 0.44 +0.8
4,061,419 + ABIE41_RS19785 0.52 +1.4
4,061,785 + ABIE41_RS19785 0.83 +0.9
4,061,786 - ABIE41_RS19785 0.83 -0.2
4,061,786 - ABIE41_RS19785 0.83 +0.7
4,061,786 - ABIE41_RS19785 0.83 +0.2
4,061,797 + ABIE41_RS19785 0.84 +2.2
4,061,797 + ABIE41_RS19785 0.84 -0.3
4,062,040 + +0.3
4,062,040 + +0.4
4,062,040 + +0.5
4,062,111 + -0.0
4,062,112 - +2.0
4,062,186 + -1.0
4,062,186 + +1.2
4,062,186 + -1.0
4,062,197 - -0.7
4,062,262 + ABIE41_RS19790 0.19 +0.5
4,062,263 - ABIE41_RS19790 0.19 +1.6
4,062,298 + ABIE41_RS19790 0.28 -0.4
4,062,299 - ABIE41_RS19790 0.28 +0.4
4,062,501 + ABIE41_RS19790 0.81 -0.1
4,062,546 - +0.1
4,062,984 + -0.3

Or see this region's nucleotide sequence