Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS19780 and ABIE41_RS19785 are separated by 207 nucleotides ABIE41_RS19785 and ABIE41_RS19790 are separated by 194 nucleotides
ABIE41_RS19780: ABIE41_RS19780 - serine hydroxymethyltransferase, at 4,059,280 to 4,060,581
_RS19780
ABIE41_RS19785: ABIE41_RS19785 - Na+/H+ antiporter NhaA, at 4,060,789 to 4,061,994
_RS19785
ABIE41_RS19790: ABIE41_RS19790 - cupin domain-containing protein, at 4,062,189 to 4,062,575
_RS19790
Position (kb)
4060
4061
4062 Strain fitness (log2 ratio)
-1
0
1
2 at 4060.687 kb on - strand at 4060.687 kb on - strand at 4060.954 kb on + strand, within ABIE41_RS19785 at 4060.954 kb on + strand, within ABIE41_RS19785 at 4060.954 kb on + strand, within ABIE41_RS19785 at 4060.954 kb on + strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4060.955 kb on - strand, within ABIE41_RS19785 at 4061.131 kb on + strand, within ABIE41_RS19785 at 4061.131 kb on + strand, within ABIE41_RS19785 at 4061.131 kb on + strand, within ABIE41_RS19785 at 4061.131 kb on + strand, within ABIE41_RS19785 at 4061.320 kb on + strand, within ABIE41_RS19785 at 4061.321 kb on - strand, within ABIE41_RS19785 at 4061.419 kb on + strand, within ABIE41_RS19785 at 4061.785 kb on + strand, within ABIE41_RS19785 at 4061.786 kb on - strand, within ABIE41_RS19785 at 4061.786 kb on - strand, within ABIE41_RS19785 at 4061.786 kb on - strand, within ABIE41_RS19785 at 4061.797 kb on + strand, within ABIE41_RS19785 at 4061.797 kb on + strand, within ABIE41_RS19785 at 4062.040 kb on + strand at 4062.040 kb on + strand at 4062.040 kb on + strand at 4062.111 kb on + strand at 4062.112 kb on - strand at 4062.186 kb on + strand at 4062.186 kb on + strand at 4062.186 kb on + strand at 4062.197 kb on - strand at 4062.262 kb on + strand, within ABIE41_RS19790 at 4062.263 kb on - strand, within ABIE41_RS19790 at 4062.298 kb on + strand, within ABIE41_RS19790 at 4062.299 kb on - strand, within ABIE41_RS19790 at 4062.501 kb on + strand, within ABIE41_RS19790 at 4062.546 kb on - strand at 4062.984 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 4,060,687 - +0.3 4,060,687 - +0.7 4,060,954 + ABIE41_RS19785 0.14 -0.0 4,060,954 + ABIE41_RS19785 0.14 +0.2 4,060,954 + ABIE41_RS19785 0.14 -0.4 4,060,954 + ABIE41_RS19785 0.14 -0.6 4,060,955 - ABIE41_RS19785 0.14 -0.8 4,060,955 - ABIE41_RS19785 0.14 -0.6 4,060,955 - ABIE41_RS19785 0.14 -1.7 4,060,955 - ABIE41_RS19785 0.14 -0.7 4,060,955 - ABIE41_RS19785 0.14 +1.0 4,061,131 + ABIE41_RS19785 0.28 -0.1 4,061,131 + ABIE41_RS19785 0.28 -1.1 4,061,131 + ABIE41_RS19785 0.28 +0.7 4,061,131 + ABIE41_RS19785 0.28 +1.2 4,061,320 + ABIE41_RS19785 0.44 +0.5 4,061,321 - ABIE41_RS19785 0.44 +0.8 4,061,419 + ABIE41_RS19785 0.52 +1.4 4,061,785 + ABIE41_RS19785 0.83 +0.9 4,061,786 - ABIE41_RS19785 0.83 -0.2 4,061,786 - ABIE41_RS19785 0.83 +0.7 4,061,786 - ABIE41_RS19785 0.83 +0.2 4,061,797 + ABIE41_RS19785 0.84 +2.2 4,061,797 + ABIE41_RS19785 0.84 -0.3 4,062,040 + +0.3 4,062,040 + +0.4 4,062,040 + +0.5 4,062,111 + -0.0 4,062,112 - +2.0 4,062,186 + -1.0 4,062,186 + +1.2 4,062,186 + -1.0 4,062,197 - -0.7 4,062,262 + ABIE41_RS19790 0.19 +0.5 4,062,263 - ABIE41_RS19790 0.19 +1.6 4,062,298 + ABIE41_RS19790 0.28 -0.4 4,062,299 - ABIE41_RS19790 0.28 +0.4 4,062,501 + ABIE41_RS19790 0.81 -0.1 4,062,546 - +0.1 4,062,984 + -0.3
Or see this region's nucleotide sequence