Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17780

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17770 and ABIE41_RS17775 are separated by 3 nucleotidesABIE41_RS17775 and ABIE41_RS17780 are separated by 182 nucleotidesABIE41_RS17780 and ABIE41_RS17785 are separated by 37 nucleotidesABIE41_RS17785 and ABIE41_RS17790 are separated by 168 nucleotides ABIE41_RS17770: ABIE41_RS17770 - 30S ribosomal protein S6, at 3,661,213 to 3,661,671 _RS17770 ABIE41_RS17775: ABIE41_RS17775 - 30S ribosomal protein S18, at 3,661,675 to 3,661,920 _RS17775 ABIE41_RS17780: ABIE41_RS17780 - DUF2232 domain-containing protein, at 3,662,103 to 3,663,062 _RS17780 ABIE41_RS17785: ABIE41_RS17785 - 50S ribosomal protein L9, at 3,663,100 to 3,663,663 _RS17785 ABIE41_RS17790: ABIE41_RS17790 - replicative DNA helicase, at 3,663,832 to 3,665,319 _RS17790 Position (kb) 3662 3663 3664Strain fitness (log2 ratio) -2 -1 0 1 2at 3661.906 kb on + strandat 3661.906 kb on + strandat 3662.499 kb on + strand, within ABIE41_RS17780at 3662.940 kb on + strand, within ABIE41_RS17780at 3662.940 kb on + strand, within ABIE41_RS17780at 3662.941 kb on - strand, within ABIE41_RS17780at 3663.093 kb on + strandat 3663.093 kb on + strandat 3663.185 kb on - strand, within ABIE41_RS17785at 3663.185 kb on - strand, within ABIE41_RS17785at 3663.185 kb on - strand, within ABIE41_RS17785at 3663.185 kb on - strand, within ABIE41_RS17785at 3663.368 kb on - strand, within ABIE41_RS17785at 3663.721 kb on + strandat 3663.721 kb on + strandat 3663.721 kb on + strandat 3663.781 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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3,661,906 + -0.1
3,661,906 + +2.5
3,662,499 + ABIE41_RS17780 0.41 -0.0
3,662,940 + ABIE41_RS17780 0.87 +0.2
3,662,940 + ABIE41_RS17780 0.87 -1.1
3,662,941 - ABIE41_RS17780 0.87 -1.7
3,663,093 + -0.9
3,663,093 + -2.0
3,663,185 - ABIE41_RS17785 0.15 +1.0
3,663,185 - ABIE41_RS17785 0.15 -1.1
3,663,185 - ABIE41_RS17785 0.15 +0.4
3,663,185 - ABIE41_RS17785 0.15 -1.8
3,663,368 - ABIE41_RS17785 0.48 -0.7
3,663,721 + -0.2
3,663,721 + +0.2
3,663,721 + +0.0
3,663,781 + -1.8

Or see this region's nucleotide sequence