Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17770 and ABIE41_RS17775 are separated by 3 nucleotides ABIE41_RS17775 and ABIE41_RS17780 are separated by 182 nucleotides ABIE41_RS17780 and ABIE41_RS17785 are separated by 37 nucleotides ABIE41_RS17785 and ABIE41_RS17790 are separated by 168 nucleotides
ABIE41_RS17770: ABIE41_RS17770 - 30S ribosomal protein S6, at 3,661,213 to 3,661,671
_RS17770
ABIE41_RS17775: ABIE41_RS17775 - 30S ribosomal protein S18, at 3,661,675 to 3,661,920
_RS17775
ABIE41_RS17780: ABIE41_RS17780 - DUF2232 domain-containing protein, at 3,662,103 to 3,663,062
_RS17780
ABIE41_RS17785: ABIE41_RS17785 - 50S ribosomal protein L9, at 3,663,100 to 3,663,663
_RS17785
ABIE41_RS17790: ABIE41_RS17790 - replicative DNA helicase, at 3,663,832 to 3,665,319
_RS17790
Position (kb)
3662
3663
3664 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3661.906 kb on + strand at 3661.906 kb on + strand at 3662.499 kb on + strand, within ABIE41_RS17780 at 3662.940 kb on + strand, within ABIE41_RS17780 at 3662.940 kb on + strand, within ABIE41_RS17780 at 3662.941 kb on - strand, within ABIE41_RS17780 at 3663.093 kb on + strand at 3663.093 kb on + strand at 3663.185 kb on - strand, within ABIE41_RS17785 at 3663.185 kb on - strand, within ABIE41_RS17785 at 3663.185 kb on - strand, within ABIE41_RS17785 at 3663.185 kb on - strand, within ABIE41_RS17785 at 3663.368 kb on - strand, within ABIE41_RS17785 at 3663.721 kb on + strand at 3663.721 kb on + strand at 3663.721 kb on + strand at 3663.781 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 3,661,906 + -0.1 3,661,906 + +2.5 3,662,499 + ABIE41_RS17780 0.41 -0.0 3,662,940 + ABIE41_RS17780 0.87 +0.2 3,662,940 + ABIE41_RS17780 0.87 -1.1 3,662,941 - ABIE41_RS17780 0.87 -1.7 3,663,093 + -0.9 3,663,093 + -2.0 3,663,185 - ABIE41_RS17785 0.15 +1.0 3,663,185 - ABIE41_RS17785 0.15 -1.1 3,663,185 - ABIE41_RS17785 0.15 +0.4 3,663,185 - ABIE41_RS17785 0.15 -1.8 3,663,368 - ABIE41_RS17785 0.48 -0.7 3,663,721 + -0.2 3,663,721 + +0.2 3,663,721 + +0.0 3,663,781 + -1.8
Or see this region's nucleotide sequence