Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16800 and ABIE41_RS16805 are separated by 4 nucleotides ABIE41_RS16805 and ABIE41_RS16810 are separated by 18 nucleotides ABIE41_RS16810 and ABIE41_RS16815 are separated by 15 nucleotides
ABIE41_RS16800: ABIE41_RS16800 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 3,464,382 to 3,465,593
_RS16800
ABIE41_RS16805: ABIE41_RS16805 - CinA family protein, at 3,465,598 to 3,466,089
_RS16805
ABIE41_RS16810: ABIE41_RS16810 - type II toxin-antitoxin system RatA family toxin, at 3,466,108 to 3,466,587
_RS16810
ABIE41_RS16815: ABIE41_RS16815 - lipoyl synthase, at 3,466,603 to 3,467,628
_RS16815
Position (kb) 3465
3466
3467 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3465.763 kb on + strand, within ABIE41_RS16805 at 3465.763 kb on + strand, within ABIE41_RS16805 at 3465.764 kb on - strand, within ABIE41_RS16805 at 3466.149 kb on - strand at 3466.250 kb on + strand, within ABIE41_RS16810 at 3466.250 kb on + strand, within ABIE41_RS16810 at 3466.251 kb on - strand, within ABIE41_RS16810 at 3466.251 kb on - strand, within ABIE41_RS16810 at 3466.337 kb on + strand, within ABIE41_RS16810 at 3466.338 kb on - strand, within ABIE41_RS16810 at 3466.338 kb on - strand, within ABIE41_RS16810 at 3466.338 kb on - strand, within ABIE41_RS16810 at 3466.338 kb on - strand, within ABIE41_RS16810 at 3466.410 kb on - strand, within ABIE41_RS16810 at 3466.508 kb on + strand, within ABIE41_RS16810 at 3466.509 kb on - strand, within ABIE41_RS16810
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 3,465,763 + ABIE41_RS16805 0.34 +1.0 3,465,763 + ABIE41_RS16805 0.34 -2.0 3,465,764 - ABIE41_RS16805 0.34 -0.2 3,466,149 - -0.9 3,466,250 + ABIE41_RS16810 0.30 -1.0 3,466,250 + ABIE41_RS16810 0.30 -2.2 3,466,251 - ABIE41_RS16810 0.30 -2.3 3,466,251 - ABIE41_RS16810 0.30 -2.2 3,466,337 + ABIE41_RS16810 0.48 -2.0 3,466,338 - ABIE41_RS16810 0.48 -0.9 3,466,338 - ABIE41_RS16810 0.48 -3.7 3,466,338 - ABIE41_RS16810 0.48 -4.3 3,466,338 - ABIE41_RS16810 0.48 -2.4 3,466,410 - ABIE41_RS16810 0.63 -0.8 3,466,508 + ABIE41_RS16810 0.83 -0.3 3,466,509 - ABIE41_RS16810 0.84 -1.4
Or see this region's nucleotide sequence