Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS10520 and ABIE41_RS10525 are separated by 0 nucleotides ABIE41_RS10525 and ABIE41_RS10530 are separated by 96 nucleotides ABIE41_RS10530 and ABIE41_RS10535 overlap by 4 nucleotides
ABIE41_RS10520: ABIE41_RS10520 - methyl-accepting chemotaxis protein, at 2,169,709 to 2,171,262
_RS10520
ABIE41_RS10525: ABIE41_RS10525 - NAD-dependent epimerase, at 2,171,263 to 2,172,291
_RS10525
ABIE41_RS10530: ABIE41_RS10530 - cbb3-type cytochrome oxidase assembly protein CcoS, at 2,172,388 to 2,172,603
_RS10530
ABIE41_RS10535: ABIE41_RS10535 - heavy metal translocating P-type ATPase, at 2,172,600 to 2,174,807
_RS10535
Position (kb)
2171
2172
2173 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2170.288 kb on + strand, within ABIE41_RS10520 at 2170.288 kb on + strand, within ABIE41_RS10520 at 2170.288 kb on + strand, within ABIE41_RS10520 at 2170.288 kb on + strand, within ABIE41_RS10520 at 2170.288 kb on + strand, within ABIE41_RS10520 at 2170.288 kb on + strand, within ABIE41_RS10520 at 2170.289 kb on - strand, within ABIE41_RS10520 at 2170.500 kb on + strand, within ABIE41_RS10520 at 2170.500 kb on + strand, within ABIE41_RS10520 at 2170.500 kb on + strand, within ABIE41_RS10520 at 2170.501 kb on - strand, within ABIE41_RS10520 at 2170.501 kb on - strand, within ABIE41_RS10520 at 2171.064 kb on + strand, within ABIE41_RS10520 at 2171.065 kb on - strand, within ABIE41_RS10520 at 2171.295 kb on - strand at 2171.382 kb on - strand, within ABIE41_RS10525 at 2171.504 kb on + strand, within ABIE41_RS10525 at 2171.505 kb on - strand, within ABIE41_RS10525 at 2171.505 kb on - strand, within ABIE41_RS10525 at 2171.505 kb on - strand, within ABIE41_RS10525 at 2171.615 kb on + strand, within ABIE41_RS10525 at 2171.616 kb on - strand, within ABIE41_RS10525 at 2171.616 kb on - strand, within ABIE41_RS10525 at 2171.648 kb on + strand, within ABIE41_RS10525 at 2171.765 kb on + strand, within ABIE41_RS10525 at 2171.777 kb on + strand, within ABIE41_RS10525 at 2171.903 kb on + strand, within ABIE41_RS10525 at 2171.903 kb on + strand, within ABIE41_RS10525 at 2171.904 kb on - strand, within ABIE41_RS10525 at 2172.080 kb on + strand, within ABIE41_RS10525 at 2172.080 kb on + strand, within ABIE41_RS10525 at 2172.163 kb on + strand, within ABIE41_RS10525 at 2172.164 kb on + strand, within ABIE41_RS10525 at 2172.513 kb on - strand, within ABIE41_RS10530 at 2172.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 2,170,288 + ABIE41_RS10520 0.37 +1.9 2,170,288 + ABIE41_RS10520 0.37 +0.4 2,170,288 + ABIE41_RS10520 0.37 +1.2 2,170,288 + ABIE41_RS10520 0.37 -0.5 2,170,288 + ABIE41_RS10520 0.37 +1.6 2,170,288 + ABIE41_RS10520 0.37 +0.3 2,170,289 - ABIE41_RS10520 0.37 -1.5 2,170,500 + ABIE41_RS10520 0.51 -0.1 2,170,500 + ABIE41_RS10520 0.51 -1.2 2,170,500 + ABIE41_RS10520 0.51 +0.2 2,170,501 - ABIE41_RS10520 0.51 -0.6 2,170,501 - ABIE41_RS10520 0.51 +0.3 2,171,064 + ABIE41_RS10520 0.87 +0.0 2,171,065 - ABIE41_RS10520 0.87 -0.2 2,171,295 - -2.3 2,171,382 - ABIE41_RS10525 0.12 +0.4 2,171,504 + ABIE41_RS10525 0.23 -0.7 2,171,505 - ABIE41_RS10525 0.24 -1.3 2,171,505 - ABIE41_RS10525 0.24 -0.9 2,171,505 - ABIE41_RS10525 0.24 -1.6 2,171,615 + ABIE41_RS10525 0.34 -2.5 2,171,616 - ABIE41_RS10525 0.34 -0.1 2,171,616 - ABIE41_RS10525 0.34 -0.7 2,171,648 + ABIE41_RS10525 0.37 -2.7 2,171,765 + ABIE41_RS10525 0.49 -3.4 2,171,777 + ABIE41_RS10525 0.50 -2.5 2,171,903 + ABIE41_RS10525 0.62 -1.8 2,171,903 + ABIE41_RS10525 0.62 +0.5 2,171,904 - ABIE41_RS10525 0.62 -0.7 2,172,080 + ABIE41_RS10525 0.79 -1.5 2,172,080 + ABIE41_RS10525 0.79 -1.8 2,172,163 + ABIE41_RS10525 0.87 -2.2 2,172,164 + ABIE41_RS10525 0.88 +1.9 2,172,513 - ABIE41_RS10530 0.58 +0.1 2,172,752 - -0.1
Or see this region's nucleotide sequence