Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02370

Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02360 and ABIE41_RS02365 overlap by 4 nucleotidesABIE41_RS02365 and ABIE41_RS02370 overlap by 4 nucleotidesABIE41_RS02370 and ABIE41_RS02375 overlap by 4 nucleotides ABIE41_RS02360: ABIE41_RS02360 - ABC transporter permease, at 470,124 to 470,939 _RS02360 ABIE41_RS02365: ABIE41_RS02365 - ABC transporter permease, at 470,936 to 471,841 _RS02365 ABIE41_RS02370: ABIE41_RS02370 - ABC transporter ATP-binding protein, at 471,838 to 472,929 _RS02370 ABIE41_RS02375: ABIE41_RS02375 - extracellular solute-binding protein, at 472,926 to 473,969 _RS02375 Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 471.064 kb on - strand, within ABIE41_RS02365at 471.078 kb on + strand, within ABIE41_RS02365at 471.078 kb on + strand, within ABIE41_RS02365at 471.102 kb on + strand, within ABIE41_RS02365at 471.102 kb on + strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.103 kb on - strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.144 kb on + strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.145 kb on - strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.447 kb on + strand, within ABIE41_RS02365at 471.448 kb on - strand, within ABIE41_RS02365at 471.448 kb on - strand, within ABIE41_RS02365at 471.448 kb on - strand, within ABIE41_RS02365at 471.448 kb on - strand, within ABIE41_RS02365at 471.500 kb on - strand, within ABIE41_RS02365at 471.500 kb on - strand, within ABIE41_RS02365at 471.537 kb on + strand, within ABIE41_RS02365at 471.537 kb on + strand, within ABIE41_RS02365at 471.538 kb on - strand, within ABIE41_RS02365at 471.538 kb on - strand, within ABIE41_RS02365at 471.538 kb on - strand, within ABIE41_RS02365at 471.618 kb on + strand, within ABIE41_RS02365at 471.619 kb on - strand, within ABIE41_RS02365at 471.619 kb on - strand, within ABIE41_RS02365at 471.977 kb on + strand, within ABIE41_RS02370at 471.977 kb on + strand, within ABIE41_RS02370at 471.977 kb on + strand, within ABIE41_RS02370at 471.977 kb on + strand, within ABIE41_RS02370at 471.977 kb on + strand, within ABIE41_RS02370at 471.978 kb on - strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.196 kb on + strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.197 kb on - strand, within ABIE41_RS02370at 472.494 kb on - strand, within ABIE41_RS02370at 472.589 kb on + strand, within ABIE41_RS02370at 472.590 kb on - strand, within ABIE41_RS02370at 472.631 kb on + strand, within ABIE41_RS02370at 472.631 kb on + strand, within ABIE41_RS02370at 472.631 kb on + strand, within ABIE41_RS02370at 472.631 kb on + strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 472.632 kb on - strand, within ABIE41_RS02370at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.089 kb on + strand, within ABIE41_RS02375at 473.090 kb on - strand, within ABIE41_RS02375at 473.090 kb on - strand, within ABIE41_RS02375at 473.092 kb on + strand, within ABIE41_RS02375at 473.092 kb on + strand, within ABIE41_RS02375at 473.093 kb on - strand, within ABIE41_RS02375at 473.166 kb on - strand, within ABIE41_RS02375at 473.237 kb on - strand, within ABIE41_RS02375at 473.488 kb on + strand, within ABIE41_RS02375at 473.488 kb on + strand, within ABIE41_RS02375at 473.489 kb on - strand, within ABIE41_RS02375at 473.489 kb on - strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.569 kb on + strand, within ABIE41_RS02375at 473.570 kb on - strand, within ABIE41_RS02375at 473.570 kb on - strand, within ABIE41_RS02375at 473.570 kb on - strand, within ABIE41_RS02375at 473.593 kb on + strand, within ABIE41_RS02375at 473.600 kb on - strand, within ABIE41_RS02375at 473.600 kb on - strand, within ABIE41_RS02375at 473.720 kb on - strand, within ABIE41_RS02375

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM
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471,064 - ABIE41_RS02365 0.14 +0.9
471,078 + ABIE41_RS02365 0.16 +2.9
471,078 + ABIE41_RS02365 0.16 +0.5
471,102 + ABIE41_RS02365 0.18 -1.8
471,102 + ABIE41_RS02365 0.18 +0.5
471,103 - ABIE41_RS02365 0.18 -0.6
471,103 - ABIE41_RS02365 0.18 +1.0
471,103 - ABIE41_RS02365 0.18 +0.1
471,103 - ABIE41_RS02365 0.18 -2.9
471,103 - ABIE41_RS02365 0.18 -0.1
471,144 + ABIE41_RS02365 0.23 +0.6
471,144 + ABIE41_RS02365 0.23 -0.0
471,144 + ABIE41_RS02365 0.23 +0.4
471,144 + ABIE41_RS02365 0.23 -0.9
471,144 + ABIE41_RS02365 0.23 +0.2
471,144 + ABIE41_RS02365 0.23 -0.7
471,144 + ABIE41_RS02365 0.23 +1.1
471,145 - ABIE41_RS02365 0.23 +0.3
471,145 - ABIE41_RS02365 0.23 +1.2
471,145 - ABIE41_RS02365 0.23 -0.1
471,145 - ABIE41_RS02365 0.23 -0.4
471,145 - ABIE41_RS02365 0.23 -0.4
471,447 + ABIE41_RS02365 0.56 -0.3
471,447 + ABIE41_RS02365 0.56 -1.5
471,447 + ABIE41_RS02365 0.56 +0.2
471,447 + ABIE41_RS02365 0.56 -0.9
471,447 + ABIE41_RS02365 0.56 +0.3
471,447 + ABIE41_RS02365 0.56 +0.7
471,447 + ABIE41_RS02365 0.56 -1.4
471,447 + ABIE41_RS02365 0.56 +1.1
471,447 + ABIE41_RS02365 0.56 +1.9
471,447 + ABIE41_RS02365 0.56 +1.5
471,448 - ABIE41_RS02365 0.57 +0.1
471,448 - ABIE41_RS02365 0.57 -0.4
471,448 - ABIE41_RS02365 0.57 -0.4
471,448 - ABIE41_RS02365 0.57 +0.0
471,500 - ABIE41_RS02365 0.62 -0.5
471,500 - ABIE41_RS02365 0.62 +0.6
471,537 + ABIE41_RS02365 0.66 -1.0
471,537 + ABIE41_RS02365 0.66 -0.1
471,538 - ABIE41_RS02365 0.66 -0.2
471,538 - ABIE41_RS02365 0.66 +0.1
471,538 - ABIE41_RS02365 0.66 +1.8
471,618 + ABIE41_RS02365 0.75 +0.3
471,619 - ABIE41_RS02365 0.75 -1.7
471,619 - ABIE41_RS02365 0.75 +0.9
471,977 + ABIE41_RS02370 0.13 -0.2
471,977 + ABIE41_RS02370 0.13 +0.1
471,977 + ABIE41_RS02370 0.13 +1.7
471,977 + ABIE41_RS02370 0.13 -1.4
471,977 + ABIE41_RS02370 0.13 +1.2
471,978 - ABIE41_RS02370 0.13 +1.2
472,196 + ABIE41_RS02370 0.33 -0.1
472,196 + ABIE41_RS02370 0.33 -0.1
472,196 + ABIE41_RS02370 0.33 +0.7
472,196 + ABIE41_RS02370 0.33 +0.2
472,196 + ABIE41_RS02370 0.33 -0.6
472,196 + ABIE41_RS02370 0.33 +0.4
472,196 + ABIE41_RS02370 0.33 -0.1
472,196 + ABIE41_RS02370 0.33 -0.4
472,196 + ABIE41_RS02370 0.33 -1.1
472,197 - ABIE41_RS02370 0.33 +0.2
472,197 - ABIE41_RS02370 0.33 +0.4
472,197 - ABIE41_RS02370 0.33 +0.3
472,197 - ABIE41_RS02370 0.33 -0.2
472,197 - ABIE41_RS02370 0.33 +0.1
472,197 - ABIE41_RS02370 0.33 +0.5
472,197 - ABIE41_RS02370 0.33 +0.0
472,197 - ABIE41_RS02370 0.33 -0.4
472,494 - ABIE41_RS02370 0.60 +0.0
472,589 + ABIE41_RS02370 0.69 -0.8
472,590 - ABIE41_RS02370 0.69 +0.5
472,631 + ABIE41_RS02370 0.73 +0.5
472,631 + ABIE41_RS02370 0.73 -0.1
472,631 + ABIE41_RS02370 0.73 -1.7
472,631 + ABIE41_RS02370 0.73 -0.1
472,632 - ABIE41_RS02370 0.73 -0.8
472,632 - ABIE41_RS02370 0.73 +0.0
472,632 - ABIE41_RS02370 0.73 +0.1
472,632 - ABIE41_RS02370 0.73 +1.9
472,632 - ABIE41_RS02370 0.73 +0.6
473,089 + ABIE41_RS02375 0.16 +0.1
473,089 + ABIE41_RS02375 0.16 +0.2
473,089 + ABIE41_RS02375 0.16 -0.1
473,089 + ABIE41_RS02375 0.16 -0.2
473,089 + ABIE41_RS02375 0.16 -0.1
473,089 + ABIE41_RS02375 0.16 +0.2
473,090 - ABIE41_RS02375 0.16 +1.8
473,090 - ABIE41_RS02375 0.16 +0.5
473,092 + ABIE41_RS02375 0.16 +1.9
473,092 + ABIE41_RS02375 0.16 -0.3
473,093 - ABIE41_RS02375 0.16 +0.5
473,166 - ABIE41_RS02375 0.23 -0.7
473,237 - ABIE41_RS02375 0.30 -0.2
473,488 + ABIE41_RS02375 0.54 +0.6
473,488 + ABIE41_RS02375 0.54 +1.7
473,489 - ABIE41_RS02375 0.54 +0.8
473,489 - ABIE41_RS02375 0.54 +2.2
473,569 + ABIE41_RS02375 0.62 +1.1
473,569 + ABIE41_RS02375 0.62 -0.0
473,569 + ABIE41_RS02375 0.62 +0.0
473,569 + ABIE41_RS02375 0.62 +0.1
473,569 + ABIE41_RS02375 0.62 +1.0
473,570 - ABIE41_RS02375 0.62 +0.6
473,570 - ABIE41_RS02375 0.62 -0.6
473,570 - ABIE41_RS02375 0.62 +0.5
473,593 + ABIE41_RS02375 0.64 -0.0
473,600 - ABIE41_RS02375 0.65 +0.1
473,600 - ABIE41_RS02375 0.65 -1.4
473,720 - ABIE41_RS02375 0.76 +0.6

Or see this region's nucleotide sequence