Experiment: R2A with 1-octen-3-ol 0.603032666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01180 and ABIE41_RS01185 are separated by 119 nucleotides ABIE41_RS01185 and ABIE41_RS01190 are separated by 90 nucleotides
ABIE41_RS01180: ABIE41_RS01180 - TRAP transporter substrate-binding protein, at 227,575 to 228,594
_RS01180
ABIE41_RS01185: ABIE41_RS01185 - LacI family DNA-binding transcriptional regulator, at 228,714 to 229,769
_RS01185
ABIE41_RS01190: ABIE41_RS01190 - FAD-binding domain-containing protein, at 229,860 to 231,083
_RS01190
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 227.982 kb on - strand, within ABIE41_RS01180 at 227.982 kb on - strand, within ABIE41_RS01180 at 227.982 kb on - strand, within ABIE41_RS01180 at 228.030 kb on - strand, within ABIE41_RS01180 at 228.233 kb on + strand, within ABIE41_RS01180 at 228.234 kb on - strand, within ABIE41_RS01180 at 228.480 kb on + strand, within ABIE41_RS01180 at 228.483 kb on - strand, within ABIE41_RS01180 at 228.652 kb on + strand at 228.653 kb on - strand at 228.653 kb on - strand at 228.885 kb on + strand, within ABIE41_RS01185 at 228.886 kb on - strand, within ABIE41_RS01185 at 229.046 kb on + strand, within ABIE41_RS01185 at 229.046 kb on + strand, within ABIE41_RS01185 at 229.046 kb on + strand, within ABIE41_RS01185 at 229.214 kb on + strand, within ABIE41_RS01185 at 229.215 kb on - strand, within ABIE41_RS01185 at 229.215 kb on - strand, within ABIE41_RS01185 at 229.215 kb on - strand, within ABIE41_RS01185 at 229.230 kb on + strand, within ABIE41_RS01185 at 229.231 kb on - strand, within ABIE41_RS01185 at 229.273 kb on - strand, within ABIE41_RS01185 at 229.273 kb on - strand, within ABIE41_RS01185 at 229.273 kb on - strand, within ABIE41_RS01185 at 229.274 kb on + strand, within ABIE41_RS01185 at 229.338 kb on + strand, within ABIE41_RS01185 at 229.339 kb on - strand, within ABIE41_RS01185 at 229.339 kb on - strand, within ABIE41_RS01185 at 229.449 kb on + strand, within ABIE41_RS01185 at 229.450 kb on - strand, within ABIE41_RS01185 at 229.450 kb on - strand, within ABIE41_RS01185 at 229.500 kb on + strand, within ABIE41_RS01185 at 229.500 kb on + strand, within ABIE41_RS01185 at 229.500 kb on + strand, within ABIE41_RS01185 at 229.500 kb on + strand, within ABIE41_RS01185 at 229.500 kb on + strand, within ABIE41_RS01185 at 229.500 kb on + strand, within ABIE41_RS01185 at 229.500 kb on + strand, within ABIE41_RS01185 at 229.501 kb on - strand, within ABIE41_RS01185 at 229.501 kb on - strand, within ABIE41_RS01185 at 229.501 kb on - strand, within ABIE41_RS01185 at 229.501 kb on - strand, within ABIE41_RS01185 at 229.501 kb on - strand, within ABIE41_RS01185 at 229.501 kb on - strand, within ABIE41_RS01185 at 229.501 kb on - strand, within ABIE41_RS01185 at 229.501 kb on - strand, within ABIE41_RS01185 at 229.506 kb on - strand, within ABIE41_RS01185 at 229.942 kb on - strand at 229.942 kb on - strand at 229.959 kb on - strand at 229.959 kb on - strand at 230.008 kb on - strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.160 kb on + strand, within ABIE41_RS01190 at 230.161 kb on + strand, within ABIE41_RS01190 at 230.161 kb on - strand, within ABIE41_RS01190 at 230.161 kb on - strand, within ABIE41_RS01190 at 230.161 kb on - strand, within ABIE41_RS01190 at 230.161 kb on - strand, within ABIE41_RS01190 at 230.161 kb on - strand, within ABIE41_RS01190 at 230.161 kb on - strand, within ABIE41_RS01190 at 230.299 kb on - strand, within ABIE41_RS01190 at 230.299 kb on - strand, within ABIE41_RS01190 at 230.470 kb on - strand, within ABIE41_RS01190 at 230.470 kb on - strand, within ABIE41_RS01190
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.603032666666667 mM remove 227,982 - ABIE41_RS01180 0.40 +1.3 227,982 - ABIE41_RS01180 0.40 +0.1 227,982 - ABIE41_RS01180 0.40 -1.1 228,030 - ABIE41_RS01180 0.45 -0.2 228,233 + ABIE41_RS01180 0.65 -0.4 228,234 - ABIE41_RS01180 0.65 -0.4 228,480 + ABIE41_RS01180 0.89 -0.3 228,483 - ABIE41_RS01180 0.89 -0.5 228,652 + -0.2 228,653 - +0.1 228,653 - -0.4 228,885 + ABIE41_RS01185 0.16 +1.1 228,886 - ABIE41_RS01185 0.16 +0.3 229,046 + ABIE41_RS01185 0.31 -0.8 229,046 + ABIE41_RS01185 0.31 +1.7 229,046 + ABIE41_RS01185 0.31 +0.8 229,214 + ABIE41_RS01185 0.47 -0.5 229,215 - ABIE41_RS01185 0.47 +0.5 229,215 - ABIE41_RS01185 0.47 +0.2 229,215 - ABIE41_RS01185 0.47 -1.0 229,230 + ABIE41_RS01185 0.49 -0.3 229,231 - ABIE41_RS01185 0.49 +2.9 229,273 - ABIE41_RS01185 0.53 -0.5 229,273 - ABIE41_RS01185 0.53 +0.4 229,273 - ABIE41_RS01185 0.53 +0.9 229,274 + ABIE41_RS01185 0.53 +0.9 229,338 + ABIE41_RS01185 0.59 +0.1 229,339 - ABIE41_RS01185 0.59 +0.1 229,339 - ABIE41_RS01185 0.59 -0.1 229,449 + ABIE41_RS01185 0.70 -0.6 229,450 - ABIE41_RS01185 0.70 +0.3 229,450 - ABIE41_RS01185 0.70 -0.1 229,500 + ABIE41_RS01185 0.74 +0.7 229,500 + ABIE41_RS01185 0.74 +1.6 229,500 + ABIE41_RS01185 0.74 -0.2 229,500 + ABIE41_RS01185 0.74 -0.5 229,500 + ABIE41_RS01185 0.74 +0.9 229,500 + ABIE41_RS01185 0.74 -0.3 229,500 + ABIE41_RS01185 0.74 -0.1 229,501 - ABIE41_RS01185 0.75 -1.1 229,501 - ABIE41_RS01185 0.75 +1.1 229,501 - ABIE41_RS01185 0.75 +0.8 229,501 - ABIE41_RS01185 0.75 -0.3 229,501 - ABIE41_RS01185 0.75 +0.7 229,501 - ABIE41_RS01185 0.75 +1.5 229,501 - ABIE41_RS01185 0.75 +0.1 229,501 - ABIE41_RS01185 0.75 -1.5 229,506 - ABIE41_RS01185 0.75 +0.2 229,942 - -0.8 229,942 - -0.2 229,959 - +1.1 229,959 - -0.3 230,008 - ABIE41_RS01190 0.12 +0.4 230,160 + ABIE41_RS01190 0.25 -0.3 230,160 + ABIE41_RS01190 0.25 -1.5 230,160 + ABIE41_RS01190 0.25 -0.3 230,160 + ABIE41_RS01190 0.25 -1.0 230,160 + ABIE41_RS01190 0.25 -0.5 230,160 + ABIE41_RS01190 0.25 -0.1 230,160 + ABIE41_RS01190 0.25 +2.1 230,160 + ABIE41_RS01190 0.25 +0.2 230,160 + ABIE41_RS01190 0.25 -0.5 230,160 + ABIE41_RS01190 0.25 -0.1 230,160 + ABIE41_RS01190 0.25 +0.7 230,161 + ABIE41_RS01190 0.25 -0.9 230,161 - ABIE41_RS01190 0.25 -1.1 230,161 - ABIE41_RS01190 0.25 -1.6 230,161 - ABIE41_RS01190 0.25 +1.7 230,161 - ABIE41_RS01190 0.25 +1.6 230,161 - ABIE41_RS01190 0.25 -0.1 230,161 - ABIE41_RS01190 0.25 +0.6 230,299 - ABIE41_RS01190 0.36 +0.4 230,299 - ABIE41_RS01190 0.36 +0.8 230,470 - ABIE41_RS01190 0.50 +0.1 230,470 - ABIE41_RS01190 0.50 -2.5
Or see this region's nucleotide sequence