Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20280 and ABIE41_RS20285 are separated by 526 nucleotides ABIE41_RS20285 and ABIE41_RS20290 overlap by 1 nucleotides
ABIE41_RS20280: ABIE41_RS20280 - LysR family transcriptional regulator, at 4,167,907 to 4,168,842
_RS20280
ABIE41_RS20285: ABIE41_RS20285 - ABC transporter ATP-binding protein, at 4,169,369 to 4,170,118
_RS20285
ABIE41_RS20290: ABIE41_RS20290 - hypothetical protein, at 4,170,118 to 4,171,650
_RS20290
Position (kb) 4169
4170
4171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4168.420 kb on + strand, within ABIE41_RS20280 at 4168.420 kb on + strand, within ABIE41_RS20280 at 4168.420 kb on + strand, within ABIE41_RS20280 at 4168.420 kb on + strand, within ABIE41_RS20280 at 4168.421 kb on - strand, within ABIE41_RS20280 at 4168.421 kb on - strand, within ABIE41_RS20280 at 4168.421 kb on - strand, within ABIE41_RS20280 at 4168.484 kb on - strand, within ABIE41_RS20280 at 4168.811 kb on - strand at 4168.811 kb on - strand at 4169.002 kb on - strand at 4169.080 kb on - strand at 4169.080 kb on - strand at 4169.080 kb on - strand at 4169.175 kb on + strand at 4169.314 kb on - strand at 4169.340 kb on + strand at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.664 kb on - strand, within ABIE41_RS20285 at 4169.954 kb on - strand, within ABIE41_RS20285 at 4169.987 kb on - strand, within ABIE41_RS20285 at 4170.403 kb on + strand, within ABIE41_RS20290 at 4170.403 kb on + strand, within ABIE41_RS20290 at 4170.404 kb on - strand, within ABIE41_RS20290 at 4170.404 kb on - strand, within ABIE41_RS20290 at 4170.407 kb on - strand, within ABIE41_RS20290 at 4170.411 kb on - strand, within ABIE41_RS20290 at 4170.412 kb on + strand, within ABIE41_RS20290 at 4170.412 kb on + strand, within ABIE41_RS20290 at 4170.412 kb on + strand, within ABIE41_RS20290 at 4170.413 kb on - strand, within ABIE41_RS20290 at 4170.413 kb on - strand, within ABIE41_RS20290 at 4170.523 kb on + strand, within ABIE41_RS20290 at 4170.524 kb on - strand, within ABIE41_RS20290 at 4170.524 kb on - strand, within ABIE41_RS20290 at 4170.784 kb on + strand, within ABIE41_RS20290 at 4170.784 kb on + strand, within ABIE41_RS20290 at 4170.785 kb on - strand, within ABIE41_RS20290 at 4170.785 kb on - strand, within ABIE41_RS20290
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 4,168,420 + ABIE41_RS20280 0.55 -2.4 4,168,420 + ABIE41_RS20280 0.55 -0.8 4,168,420 + ABIE41_RS20280 0.55 -0.8 4,168,420 + ABIE41_RS20280 0.55 +0.0 4,168,421 - ABIE41_RS20280 0.55 +0.1 4,168,421 - ABIE41_RS20280 0.55 -0.9 4,168,421 - ABIE41_RS20280 0.55 +0.5 4,168,484 - ABIE41_RS20280 0.62 +0.3 4,168,811 - -0.1 4,168,811 - +1.9 4,169,002 - +0.4 4,169,080 - +0.3 4,169,080 - +1.0 4,169,080 - -0.0 4,169,175 + +0.6 4,169,314 - +0.0 4,169,340 + -0.5 4,169,472 - ABIE41_RS20285 0.14 +0.6 4,169,472 - ABIE41_RS20285 0.14 -3.5 4,169,472 - ABIE41_RS20285 0.14 +2.2 4,169,639 + ABIE41_RS20285 0.36 +0.2 4,169,639 + ABIE41_RS20285 0.36 +1.1 4,169,639 + ABIE41_RS20285 0.36 -0.3 4,169,639 + ABIE41_RS20285 0.36 +0.4 4,169,639 + ABIE41_RS20285 0.36 +1.6 4,169,640 - ABIE41_RS20285 0.36 +0.2 4,169,640 - ABIE41_RS20285 0.36 +1.1 4,169,640 - ABIE41_RS20285 0.36 +0.2 4,169,640 - ABIE41_RS20285 0.36 +1.2 4,169,664 - ABIE41_RS20285 0.39 +0.9 4,169,954 - ABIE41_RS20285 0.78 +0.1 4,169,987 - ABIE41_RS20285 0.82 -0.4 4,170,403 + ABIE41_RS20290 0.19 +0.9 4,170,403 + ABIE41_RS20290 0.19 +0.5 4,170,404 - ABIE41_RS20290 0.19 -0.5 4,170,404 - ABIE41_RS20290 0.19 +0.1 4,170,407 - ABIE41_RS20290 0.19 +0.8 4,170,411 - ABIE41_RS20290 0.19 +0.7 4,170,412 + ABIE41_RS20290 0.19 -1.2 4,170,412 + ABIE41_RS20290 0.19 +0.6 4,170,412 + ABIE41_RS20290 0.19 +1.5 4,170,413 - ABIE41_RS20290 0.19 +0.0 4,170,413 - ABIE41_RS20290 0.19 +1.4 4,170,523 + ABIE41_RS20290 0.26 -1.0 4,170,524 - ABIE41_RS20290 0.26 -0.2 4,170,524 - ABIE41_RS20290 0.26 -0.3 4,170,784 + ABIE41_RS20290 0.43 +0.8 4,170,784 + ABIE41_RS20290 0.43 -0.4 4,170,785 - ABIE41_RS20290 0.44 -0.6 4,170,785 - ABIE41_RS20290 0.44 +1.0
Or see this region's nucleotide sequence