Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16900

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16895 and ABIE41_RS16900 are separated by 219 nucleotidesABIE41_RS16900 and ABIE41_RS16905 are separated by 0 nucleotidesABIE41_RS16905 and ABIE41_RS16910 are separated by 335 nucleotides ABIE41_RS16895: ABIE41_RS16895 - type I glutamate--ammonia ligase, at 3,480,606 to 3,482,015 _RS16895 ABIE41_RS16900: ABIE41_RS16900 - glycosyltransferase family 1 protein, at 3,482,235 to 3,483,332 _RS16900 ABIE41_RS16905: ABIE41_RS16905 - hypothetical protein, at 3,483,333 to 3,483,479 _RS16905 ABIE41_RS16910: ABIE41_RS16910 - DNA topoisomerase IV subunit B, at 3,483,815 to 3,485,872 _RS16910 Position (kb) 3482 3483 3484Strain fitness (log2 ratio) -2 -1 0 1 2at 3482.010 kb on + strandat 3482.010 kb on + strandat 3482.010 kb on + strandat 3482.182 kb on - strandat 3482.814 kb on + strand, within ABIE41_RS16900at 3482.814 kb on + strand, within ABIE41_RS16900at 3482.814 kb on + strand, within ABIE41_RS16900at 3482.814 kb on + strand, within ABIE41_RS16900at 3482.814 kb on + strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.821 kb on + strand, within ABIE41_RS16900at 3482.821 kb on + strand, within ABIE41_RS16900at 3482.822 kb on - strand, within ABIE41_RS16900at 3483.051 kb on + strand, within ABIE41_RS16900at 3483.052 kb on - strand, within ABIE41_RS16900at 3483.156 kb on + strand, within ABIE41_RS16900at 3483.157 kb on - strand, within ABIE41_RS16900at 3483.157 kb on - strand, within ABIE41_RS16900at 3483.687 kb on + strandat 3483.687 kb on + strandat 3483.687 kb on + strandat 3483.687 kb on + strandat 3483.687 kb on + strandat 3483.687 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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3,482,010 + -0.1
3,482,010 + -0.5
3,482,010 + -1.7
3,482,182 - +0.8
3,482,814 + ABIE41_RS16900 0.53 -0.4
3,482,814 + ABIE41_RS16900 0.53 +0.7
3,482,814 + ABIE41_RS16900 0.53 -0.6
3,482,814 + ABIE41_RS16900 0.53 -0.3
3,482,814 + ABIE41_RS16900 0.53 +0.5
3,482,815 - ABIE41_RS16900 0.53 +0.1
3,482,815 - ABIE41_RS16900 0.53 +0.2
3,482,815 - ABIE41_RS16900 0.53 +0.0
3,482,815 - ABIE41_RS16900 0.53 -1.0
3,482,815 - ABIE41_RS16900 0.53 +1.9
3,482,821 + ABIE41_RS16900 0.53 -0.4
3,482,821 + ABIE41_RS16900 0.53 -1.8
3,482,822 - ABIE41_RS16900 0.53 -1.4
3,483,051 + ABIE41_RS16900 0.74 +0.6
3,483,052 - ABIE41_RS16900 0.74 -0.2
3,483,156 + ABIE41_RS16900 0.84 -2.5
3,483,157 - ABIE41_RS16900 0.84 -0.5
3,483,157 - ABIE41_RS16900 0.84 -0.4
3,483,687 + -0.7
3,483,687 + +0.0
3,483,687 + +0.2
3,483,687 + +0.7
3,483,687 + -1.5
3,483,687 + -0.3

Or see this region's nucleotide sequence