Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14915 and ABIE41_RS14920 are separated by 171 nucleotides ABIE41_RS14920 and ABIE41_RS14925 are separated by 145 nucleotides ABIE41_RS14925 and ABIE41_RS14930 are separated by 118 nucleotides ABIE41_RS14930 and ABIE41_RS14935 are separated by 103 nucleotides
ABIE41_RS14915: ABIE41_RS14915 - VOC family protein, at 3,046,183 to 3,047,157
_RS14915
ABIE41_RS14920: ABIE41_RS14920 - hypothetical protein, at 3,047,329 to 3,047,721
_RS14920
ABIE41_RS14925: ABIE41_RS14925 - aminotransferase, at 3,047,867 to 3,049,051
_RS14925
ABIE41_RS14930: ABIE41_RS14930 - Sir2 family NAD-dependent protein deacetylase, at 3,049,170 to 3,049,925
_RS14930
ABIE41_RS14935: ABIE41_RS14935 - DUF3429 domain-containing protein, at 3,050,029 to 3,050,484
_RS14935
Position (kb)
3047
3048
3049
3050 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3046.955 kb on + strand, within ABIE41_RS14915 at 3046.955 kb on + strand, within ABIE41_RS14915 at 3047.189 kb on + strand at 3047.243 kb on + strand at 3047.244 kb on - strand at 3047.760 kb on - strand at 3047.875 kb on + strand at 3047.970 kb on + strand at 3048.061 kb on - strand, within ABIE41_RS14925 at 3048.333 kb on + strand, within ABIE41_RS14925 at 3048.334 kb on - strand, within ABIE41_RS14925 at 3048.367 kb on + strand, within ABIE41_RS14925 at 3048.492 kb on + strand, within ABIE41_RS14925 at 3048.660 kb on + strand, within ABIE41_RS14925 at 3048.660 kb on + strand, within ABIE41_RS14925 at 3048.804 kb on + strand, within ABIE41_RS14925 at 3048.804 kb on + strand, within ABIE41_RS14925 at 3048.804 kb on + strand, within ABIE41_RS14925 at 3048.843 kb on + strand, within ABIE41_RS14925 at 3048.960 kb on + strand at 3048.961 kb on - strand at 3049.153 kb on + strand at 3049.401 kb on + strand, within ABIE41_RS14930 at 3049.401 kb on + strand, within ABIE41_RS14930 at 3049.402 kb on - strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.557 kb on + strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.558 kb on - strand, within ABIE41_RS14930 at 3049.780 kb on - strand, within ABIE41_RS14930 at 3049.987 kb on + strand at 3049.987 kb on + strand at 3049.987 kb on + strand at 3049.987 kb on + strand at 3049.988 kb on - strand at 3049.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 3,046,955 + ABIE41_RS14915 0.79 -0.8 3,046,955 + ABIE41_RS14915 0.79 +1.0 3,047,189 + -1.5 3,047,243 + +0.5 3,047,244 - -1.3 3,047,760 - +1.3 3,047,875 + +0.9 3,047,970 + -0.2 3,048,061 - ABIE41_RS14925 0.16 +0.5 3,048,333 + ABIE41_RS14925 0.39 +1.1 3,048,334 - ABIE41_RS14925 0.39 -1.9 3,048,367 + ABIE41_RS14925 0.42 -0.2 3,048,492 + ABIE41_RS14925 0.53 +0.4 3,048,660 + ABIE41_RS14925 0.67 +1.5 3,048,660 + ABIE41_RS14925 0.67 +1.6 3,048,804 + ABIE41_RS14925 0.79 +0.4 3,048,804 + ABIE41_RS14925 0.79 +0.3 3,048,804 + ABIE41_RS14925 0.79 +0.2 3,048,843 + ABIE41_RS14925 0.82 -0.9 3,048,960 + +0.2 3,048,961 - -0.5 3,049,153 + +1.1 3,049,401 + ABIE41_RS14930 0.31 +0.8 3,049,401 + ABIE41_RS14930 0.31 -0.5 3,049,402 - ABIE41_RS14930 0.31 +0.8 3,049,557 + ABIE41_RS14930 0.51 -0.2 3,049,557 + ABIE41_RS14930 0.51 +0.3 3,049,557 + ABIE41_RS14930 0.51 +1.4 3,049,557 + ABIE41_RS14930 0.51 +2.9 3,049,557 + ABIE41_RS14930 0.51 -1.3 3,049,558 - ABIE41_RS14930 0.51 +2.3 3,049,558 - ABIE41_RS14930 0.51 +0.2 3,049,558 - ABIE41_RS14930 0.51 +1.1 3,049,558 - ABIE41_RS14930 0.51 -0.3 3,049,558 - ABIE41_RS14930 0.51 -0.9 3,049,558 - ABIE41_RS14930 0.51 +0.0 3,049,558 - ABIE41_RS14930 0.51 +0.9 3,049,558 - ABIE41_RS14930 0.51 -0.6 3,049,558 - ABIE41_RS14930 0.51 -0.1 3,049,780 - ABIE41_RS14930 0.81 +1.0 3,049,987 + +1.3 3,049,987 + +1.2 3,049,987 + -0.4 3,049,987 + +3.1 3,049,988 - +0.9 3,049,988 - +3.8
Or see this region's nucleotide sequence