Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03645 and ABIE41_RS03650 are separated by 238 nucleotides ABIE41_RS03650 and ABIE41_RS03655 overlap by 4 nucleotides ABIE41_RS03655 and ABIE41_RS03660 are separated by 38 nucleotides
ABIE41_RS03645: ABIE41_RS03645 - methyl-accepting chemotaxis protein, at 761,672 to 763,507
_RS03645
ABIE41_RS03650: ABIE41_RS03650 - DNA mismatch repair protein MutS, at 763,746 to 766,445
_RS03650
ABIE41_RS03655: ABIE41_RS03655 - NlpC/P60 family protein, at 766,442 to 767,314
_RS03655
ABIE41_RS03660: ABIE41_RS03660 - MarR family transcriptional regulator, at 767,353 to 767,706
_RS03660
Position (kb) 763
764
765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 762.885 kb on + strand, within ABIE41_RS03645 at 763.059 kb on + strand, within ABIE41_RS03645 at 763.060 kb on - strand, within ABIE41_RS03645 at 763.228 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.230 kb on + strand, within ABIE41_RS03645 at 763.231 kb on - strand, within ABIE41_RS03645 at 763.231 kb on - strand, within ABIE41_RS03645 at 763.231 kb on - strand, within ABIE41_RS03645 at 763.231 kb on - strand, within ABIE41_RS03645 at 763.231 kb on - strand, within ABIE41_RS03645 at 763.328 kb on + strand at 763.328 kb on + strand at 763.328 kb on + strand at 763.329 kb on - strand at 763.476 kb on + strand at 763.476 kb on + strand at 763.476 kb on + strand at 763.476 kb on + strand at 763.477 kb on - strand at 763.477 kb on - strand at 763.502 kb on + strand at 763.502 kb on + strand at 763.503 kb on - strand at 763.503 kb on - strand at 763.503 kb on - strand at 763.503 kb on - strand at 763.508 kb on - strand at 763.549 kb on + strand at 763.549 kb on + strand at 763.549 kb on + strand at 763.550 kb on - strand at 763.550 kb on - strand at 763.565 kb on - strand at 763.577 kb on - strand at 763.679 kb on - strand at 763.806 kb on + strand at 763.806 kb on + strand at 763.806 kb on + strand at 763.806 kb on + strand at 763.806 kb on + strand at 763.806 kb on + strand at 763.806 kb on + strand at 763.806 kb on + strand at 763.807 kb on - strand at 763.807 kb on - strand at 763.807 kb on - strand at 763.807 kb on - strand at 763.807 kb on - strand at 763.849 kb on - strand at 763.866 kb on + strand at 763.866 kb on + strand at 763.867 kb on - strand at 763.867 kb on - strand at 763.992 kb on + strand at 763.992 kb on + strand at 763.992 kb on + strand at 763.993 kb on - strand at 763.993 kb on - strand at 764.194 kb on + strand, within ABIE41_RS03650 at 764.194 kb on + strand, within ABIE41_RS03650 at 764.195 kb on - strand, within ABIE41_RS03650 at 764.195 kb on - strand, within ABIE41_RS03650 at 764.523 kb on + strand, within ABIE41_RS03650 at 764.523 kb on + strand, within ABIE41_RS03650 at 764.523 kb on + strand, within ABIE41_RS03650 at 764.523 kb on + strand, within ABIE41_RS03650 at 764.523 kb on + strand, within ABIE41_RS03650 at 764.524 kb on - strand, within ABIE41_RS03650 at 764.524 kb on - strand, within ABIE41_RS03650 at 764.524 kb on - strand, within ABIE41_RS03650 at 764.524 kb on - strand, within ABIE41_RS03650 at 765.174 kb on + strand, within ABIE41_RS03650 at 765.174 kb on + strand, within ABIE41_RS03650 at 765.175 kb on - strand, within ABIE41_RS03650 at 765.714 kb on - strand, within ABIE41_RS03650 at 765.796 kb on + strand, within ABIE41_RS03650 at 766.041 kb on + strand, within ABIE41_RS03650 at 766.041 kb on + strand, within ABIE41_RS03650 at 766.042 kb on - strand, within ABIE41_RS03650 at 766.042 kb on - strand, within ABIE41_RS03650 at 766.042 kb on - strand, within ABIE41_RS03650 at 766.042 kb on - strand, within ABIE41_RS03650 at 766.167 kb on + strand, within ABIE41_RS03650 at 766.168 kb on - strand, within ABIE41_RS03650 at 766.168 kb on - strand, within ABIE41_RS03650 at 766.423 kb on - strand at 766.423 kb on - strand at 766.423 kb on - strand at 766.540 kb on - strand, within ABIE41_RS03655 at 766.773 kb on + strand, within ABIE41_RS03655 at 766.869 kb on + strand, within ABIE41_RS03655 at 767.056 kb on - strand, within ABIE41_RS03655 at 767.064 kb on + strand, within ABIE41_RS03655 at 767.064 kb on + strand, within ABIE41_RS03655 at 767.064 kb on + strand, within ABIE41_RS03655 at 767.064 kb on + strand, within ABIE41_RS03655 at 767.064 kb on + strand, within ABIE41_RS03655 at 767.065 kb on - strand, within ABIE41_RS03655 at 767.065 kb on - strand, within ABIE41_RS03655 at 767.065 kb on - strand, within ABIE41_RS03655 at 767.065 kb on - strand, within ABIE41_RS03655 at 767.065 kb on - strand, within ABIE41_RS03655 at 767.112 kb on + strand, within ABIE41_RS03655 at 767.112 kb on + strand, within ABIE41_RS03655 at 767.113 kb on - strand, within ABIE41_RS03655 at 767.325 kb on + strand at 767.326 kb on - strand at 767.326 kb on - strand at 767.326 kb on - strand at 767.440 kb on + strand, within ABIE41_RS03660 at 767.440 kb on + strand, within ABIE41_RS03660 at 767.440 kb on + strand, within ABIE41_RS03660 at 767.440 kb on + strand, within ABIE41_RS03660 at 767.441 kb on - strand, within ABIE41_RS03660 at 767.441 kb on - strand, within ABIE41_RS03660
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 762,885 + ABIE41_RS03645 0.66 +0.4 763,059 + ABIE41_RS03645 0.76 +1.0 763,060 - ABIE41_RS03645 0.76 +0.3 763,228 + ABIE41_RS03645 0.85 -1.7 763,230 + ABIE41_RS03645 0.85 -0.0 763,230 + ABIE41_RS03645 0.85 -1.4 763,230 + ABIE41_RS03645 0.85 +0.6 763,230 + ABIE41_RS03645 0.85 -1.1 763,230 + ABIE41_RS03645 0.85 +0.8 763,230 + ABIE41_RS03645 0.85 -0.6 763,230 + ABIE41_RS03645 0.85 -2.0 763,230 + ABIE41_RS03645 0.85 +0.8 763,230 + ABIE41_RS03645 0.85 +1.4 763,230 + ABIE41_RS03645 0.85 +3.1 763,231 - ABIE41_RS03645 0.85 -1.9 763,231 - ABIE41_RS03645 0.85 +0.4 763,231 - ABIE41_RS03645 0.85 +0.7 763,231 - ABIE41_RS03645 0.85 -0.8 763,231 - ABIE41_RS03645 0.85 -2.3 763,328 + -0.4 763,328 + +0.8 763,328 + +2.1 763,329 - -0.4 763,476 + -0.3 763,476 + +0.6 763,476 + -0.1 763,476 + -0.9 763,477 - +0.8 763,477 - +1.5 763,502 + -1.1 763,502 + -1.1 763,503 - +0.4 763,503 - -1.5 763,503 - -0.5 763,503 - -0.6 763,508 - -0.3 763,549 + -0.2 763,549 + +1.7 763,549 + +0.5 763,550 - -0.9 763,550 - +0.9 763,565 - +0.4 763,577 - +0.1 763,679 - -2.0 763,806 + +1.2 763,806 + -0.2 763,806 + +1.1 763,806 + +0.3 763,806 + +3.2 763,806 + -1.2 763,806 + -1.0 763,806 + +0.0 763,807 - +0.2 763,807 - +0.8 763,807 - -2.1 763,807 - +0.2 763,807 - +2.9 763,849 - -1.8 763,866 + +2.3 763,866 + -0.3 763,867 - +0.6 763,867 - -0.1 763,992 + +0.2 763,992 + +0.1 763,992 + +1.4 763,993 - +1.1 763,993 - +0.5 764,194 + ABIE41_RS03650 0.17 -0.3 764,194 + ABIE41_RS03650 0.17 +0.2 764,195 - ABIE41_RS03650 0.17 -0.1 764,195 - ABIE41_RS03650 0.17 -0.5 764,523 + ABIE41_RS03650 0.29 +1.6 764,523 + ABIE41_RS03650 0.29 -1.0 764,523 + ABIE41_RS03650 0.29 -0.4 764,523 + ABIE41_RS03650 0.29 -2.3 764,523 + ABIE41_RS03650 0.29 -1.9 764,524 - ABIE41_RS03650 0.29 +0.8 764,524 - ABIE41_RS03650 0.29 -3.0 764,524 - ABIE41_RS03650 0.29 +0.6 764,524 - ABIE41_RS03650 0.29 -0.9 765,174 + ABIE41_RS03650 0.53 -0.6 765,174 + ABIE41_RS03650 0.53 -0.2 765,175 - ABIE41_RS03650 0.53 -2.0 765,714 - ABIE41_RS03650 0.73 -1.1 765,796 + ABIE41_RS03650 0.76 -0.0 766,041 + ABIE41_RS03650 0.85 +0.8 766,041 + ABIE41_RS03650 0.85 -0.0 766,042 - ABIE41_RS03650 0.85 -0.7 766,042 - ABIE41_RS03650 0.85 +1.9 766,042 - ABIE41_RS03650 0.85 -1.2 766,042 - ABIE41_RS03650 0.85 +1.5 766,167 + ABIE41_RS03650 0.90 -0.3 766,168 - ABIE41_RS03650 0.90 -0.2 766,168 - ABIE41_RS03650 0.90 -0.3 766,423 - -1.6 766,423 - +0.3 766,423 - +2.2 766,540 - ABIE41_RS03655 0.11 -0.2 766,773 + ABIE41_RS03655 0.38 -2.4 766,869 + ABIE41_RS03655 0.49 -2.4 767,056 - ABIE41_RS03655 0.70 -0.5 767,064 + ABIE41_RS03655 0.71 -1.7 767,064 + ABIE41_RS03655 0.71 -2.7 767,064 + ABIE41_RS03655 0.71 +1.0 767,064 + ABIE41_RS03655 0.71 +0.0 767,064 + ABIE41_RS03655 0.71 -0.4 767,065 - ABIE41_RS03655 0.71 -1.1 767,065 - ABIE41_RS03655 0.71 -0.2 767,065 - ABIE41_RS03655 0.71 +0.3 767,065 - ABIE41_RS03655 0.71 -2.4 767,065 - ABIE41_RS03655 0.71 +0.1 767,112 + ABIE41_RS03655 0.77 -2.6 767,112 + ABIE41_RS03655 0.77 -2.4 767,113 - ABIE41_RS03655 0.77 -2.1 767,325 + +0.4 767,326 - -0.7 767,326 - -0.3 767,326 - +0.1 767,440 + ABIE41_RS03660 0.25 +0.0 767,440 + ABIE41_RS03660 0.25 -1.2 767,440 + ABIE41_RS03660 0.25 -0.8 767,440 + ABIE41_RS03660 0.25 -0.7 767,441 - ABIE41_RS03660 0.25 -0.7 767,441 - ABIE41_RS03660 0.25 -0.7
Or see this region's nucleotide sequence