Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01970 and ABIE41_RS01975 overlap by 14 nucleotides ABIE41_RS01975 and ABIE41_RS01980 are separated by 22 nucleotides ABIE41_RS01980 and ABIE41_RS01985 are separated by 253 nucleotides ABIE41_RS01985 and ABIE41_RS01990 are separated by 149 nucleotides
ABIE41_RS01970: ABIE41_RS01970 - hypothetical protein, at 395,197 to 396,021
_RS01970
ABIE41_RS01975: ABIE41_RS01975 - hypothetical protein, at 396,008 to 396,430
_RS01975
ABIE41_RS01980: ABIE41_RS01980 - phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent), at 396,453 to 398,102
_RS01980
ABIE41_RS01985: ABIE41_RS01985 - host attachment protein, at 398,356 to 398,760
_RS01985
ABIE41_RS01990: ABIE41_RS01990 - cytochrome c, at 398,910 to 399,281
_RS01990
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 395.714 kb on - strand, within ABIE41_RS01970 at 395.734 kb on + strand, within ABIE41_RS01970 at 395.735 kb on - strand, within ABIE41_RS01970 at 395.735 kb on - strand, within ABIE41_RS01970 at 396.203 kb on + strand, within ABIE41_RS01975 at 396.203 kb on + strand, within ABIE41_RS01975 at 396.203 kb on + strand, within ABIE41_RS01975 at 396.204 kb on - strand, within ABIE41_RS01975 at 396.204 kb on - strand, within ABIE41_RS01975 at 396.204 kb on - strand, within ABIE41_RS01975 at 396.204 kb on - strand, within ABIE41_RS01975 at 396.295 kb on + strand, within ABIE41_RS01975 at 396.296 kb on - strand, within ABIE41_RS01975 at 396.296 kb on - strand, within ABIE41_RS01975 at 396.296 kb on - strand, within ABIE41_RS01975 at 396.428 kb on + strand at 398.140 kb on - strand at 398.662 kb on + strand, within ABIE41_RS01985 at 398.663 kb on - strand, within ABIE41_RS01985 at 398.663 kb on - strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.667 kb on + strand, within ABIE41_RS01985 at 398.668 kb on - strand, within ABIE41_RS01985 at 398.668 kb on - strand, within ABIE41_RS01985 at 398.668 kb on - strand, within ABIE41_RS01985 at 398.847 kb on + strand at 398.847 kb on + strand at 398.847 kb on + strand at 398.848 kb on - strand at 398.848 kb on - strand at 399.048 kb on + strand, within ABIE41_RS01990 at 399.049 kb on - strand, within ABIE41_RS01990 at 399.049 kb on - strand, within ABIE41_RS01990
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 395,714 - ABIE41_RS01970 0.63 -0.9 395,734 + ABIE41_RS01970 0.65 -0.7 395,735 - ABIE41_RS01970 0.65 +0.2 395,735 - ABIE41_RS01970 0.65 -0.2 396,203 + ABIE41_RS01975 0.46 -1.3 396,203 + ABIE41_RS01975 0.46 -0.1 396,203 + ABIE41_RS01975 0.46 -0.4 396,204 - ABIE41_RS01975 0.46 -2.2 396,204 - ABIE41_RS01975 0.46 +0.8 396,204 - ABIE41_RS01975 0.46 -0.8 396,204 - ABIE41_RS01975 0.46 -1.7 396,295 + ABIE41_RS01975 0.68 -1.2 396,296 - ABIE41_RS01975 0.68 +0.3 396,296 - ABIE41_RS01975 0.68 +0.1 396,296 - ABIE41_RS01975 0.68 +1.3 396,428 + -1.1 398,140 - -0.5 398,662 + ABIE41_RS01985 0.76 +0.4 398,663 - ABIE41_RS01985 0.76 +0.4 398,663 - ABIE41_RS01985 0.76 -0.5 398,667 + ABIE41_RS01985 0.77 -0.8 398,667 + ABIE41_RS01985 0.77 -0.6 398,667 + ABIE41_RS01985 0.77 -0.2 398,667 + ABIE41_RS01985 0.77 -0.0 398,667 + ABIE41_RS01985 0.77 -0.9 398,667 + ABIE41_RS01985 0.77 +0.2 398,667 + ABIE41_RS01985 0.77 -1.0 398,667 + ABIE41_RS01985 0.77 -0.7 398,667 + ABIE41_RS01985 0.77 +0.4 398,668 - ABIE41_RS01985 0.77 +0.7 398,668 - ABIE41_RS01985 0.77 +0.4 398,668 - ABIE41_RS01985 0.77 -0.9 398,847 + +0.5 398,847 + -1.1 398,847 + -1.0 398,848 - -0.1 398,848 - +0.2 399,048 + ABIE41_RS01990 0.37 -0.1 399,049 - ABIE41_RS01990 0.37 -0.9 399,049 - ABIE41_RS01990 0.37 +3.0
Or see this region's nucleotide sequence