Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00430 and ABIE41_RS00435 are separated by 86 nucleotides ABIE41_RS00435 and ABIE41_RS00440 are separated by 124 nucleotides
ABIE41_RS00430: ABIE41_RS00430 - hypothetical protein, at 75,759 to 76,622
_RS00430
ABIE41_RS00435: ABIE41_RS00435 - AAA family ATPase, at 76,709 to 77,881
_RS00435
ABIE41_RS00440: ABIE41_RS00440 - hypothetical protein, at 78,006 to 78,935
_RS00440
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 75.870 kb on - strand, within ABIE41_RS00430 at 75.870 kb on - strand, within ABIE41_RS00430 at 75.913 kb on + strand, within ABIE41_RS00430 at 75.913 kb on + strand, within ABIE41_RS00430 at 75.914 kb on - strand, within ABIE41_RS00430 at 75.914 kb on - strand, within ABIE41_RS00430 at 75.956 kb on + strand, within ABIE41_RS00430 at 75.957 kb on - strand, within ABIE41_RS00430 at 75.957 kb on - strand, within ABIE41_RS00430 at 75.957 kb on - strand, within ABIE41_RS00430 at 75.958 kb on + strand, within ABIE41_RS00430 at 75.958 kb on + strand, within ABIE41_RS00430 at 75.958 kb on + strand, within ABIE41_RS00430 at 75.958 kb on + strand, within ABIE41_RS00430 at 75.959 kb on - strand, within ABIE41_RS00430 at 75.959 kb on - strand, within ABIE41_RS00430 at 76.137 kb on - strand, within ABIE41_RS00430 at 76.255 kb on + strand, within ABIE41_RS00430 at 76.256 kb on - strand, within ABIE41_RS00430 at 76.331 kb on + strand, within ABIE41_RS00430 at 76.331 kb on + strand, within ABIE41_RS00430 at 76.332 kb on - strand, within ABIE41_RS00430 at 76.332 kb on - strand, within ABIE41_RS00430 at 76.405 kb on + strand, within ABIE41_RS00430 at 76.405 kb on + strand, within ABIE41_RS00430 at 76.405 kb on + strand, within ABIE41_RS00430 at 76.406 kb on - strand, within ABIE41_RS00430 at 76.406 kb on - strand, within ABIE41_RS00430 at 76.422 kb on - strand, within ABIE41_RS00430 at 76.519 kb on + strand, within ABIE41_RS00430 at 76.519 kb on + strand, within ABIE41_RS00430 at 76.519 kb on + strand, within ABIE41_RS00430 at 76.520 kb on - strand, within ABIE41_RS00430 at 77.075 kb on + strand, within ABIE41_RS00435 at 77.097 kb on + strand, within ABIE41_RS00435 at 77.098 kb on - strand, within ABIE41_RS00435 at 77.154 kb on + strand, within ABIE41_RS00435 at 77.154 kb on + strand, within ABIE41_RS00435 at 77.154 kb on + strand, within ABIE41_RS00435 at 77.154 kb on + strand, within ABIE41_RS00435 at 77.154 kb on + strand, within ABIE41_RS00435 at 77.155 kb on - strand, within ABIE41_RS00435 at 77.155 kb on - strand, within ABIE41_RS00435 at 77.155 kb on - strand, within ABIE41_RS00435 at 77.384 kb on - strand, within ABIE41_RS00435 at 77.673 kb on + strand, within ABIE41_RS00435 at 77.673 kb on + strand, within ABIE41_RS00435 at 77.673 kb on + strand, within ABIE41_RS00435 at 77.673 kb on + strand, within ABIE41_RS00435 at 77.673 kb on + strand, within ABIE41_RS00435 at 77.673 kb on + strand, within ABIE41_RS00435 at 77.673 kb on + strand, within ABIE41_RS00435 at 77.673 kb on + strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.674 kb on - strand, within ABIE41_RS00435 at 77.685 kb on + strand, within ABIE41_RS00435 at 77.685 kb on + strand, within ABIE41_RS00435 at 77.686 kb on - strand, within ABIE41_RS00435 at 77.859 kb on + strand at 77.859 kb on + strand at 77.859 kb on + strand at 77.859 kb on + strand at 77.860 kb on - strand at 78.172 kb on + strand, within ABIE41_RS00440 at 78.173 kb on - strand, within ABIE41_RS00440 at 78.173 kb on - strand, within ABIE41_RS00440 at 78.173 kb on - strand, within ABIE41_RS00440 at 78.251 kb on + strand, within ABIE41_RS00440 at 78.251 kb on + strand, within ABIE41_RS00440 at 78.252 kb on - strand, within ABIE41_RS00440 at 78.252 kb on - strand, within ABIE41_RS00440 at 78.629 kb on + strand, within ABIE41_RS00440 at 78.629 kb on + strand, within ABIE41_RS00440 at 78.629 kb on + strand, within ABIE41_RS00440 at 78.629 kb on + strand, within ABIE41_RS00440 at 78.629 kb on + strand, within ABIE41_RS00440 at 78.629 kb on + strand, within ABIE41_RS00440 at 78.630 kb on - strand, within ABIE41_RS00440 at 78.630 kb on - strand, within ABIE41_RS00440 at 78.630 kb on - strand, within ABIE41_RS00440 at 78.699 kb on - strand, within ABIE41_RS00440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 75,870 - ABIE41_RS00430 0.13 +0.5 75,870 - ABIE41_RS00430 0.13 -1.0 75,913 + ABIE41_RS00430 0.18 -0.3 75,913 + ABIE41_RS00430 0.18 -0.7 75,914 - ABIE41_RS00430 0.18 -0.3 75,914 - ABIE41_RS00430 0.18 -0.4 75,956 + ABIE41_RS00430 0.23 +1.4 75,957 - ABIE41_RS00430 0.23 +0.7 75,957 - ABIE41_RS00430 0.23 -0.5 75,957 - ABIE41_RS00430 0.23 +0.6 75,958 + ABIE41_RS00430 0.23 +3.3 75,958 + ABIE41_RS00430 0.23 -1.0 75,958 + ABIE41_RS00430 0.23 +0.9 75,958 + ABIE41_RS00430 0.23 +0.1 75,959 - ABIE41_RS00430 0.23 +0.6 75,959 - ABIE41_RS00430 0.23 -0.4 76,137 - ABIE41_RS00430 0.44 +0.9 76,255 + ABIE41_RS00430 0.57 +0.3 76,256 - ABIE41_RS00430 0.58 +1.0 76,331 + ABIE41_RS00430 0.66 +2.7 76,331 + ABIE41_RS00430 0.66 -0.1 76,332 - ABIE41_RS00430 0.66 -0.4 76,332 - ABIE41_RS00430 0.66 +1.3 76,405 + ABIE41_RS00430 0.75 +0.1 76,405 + ABIE41_RS00430 0.75 -0.3 76,405 + ABIE41_RS00430 0.75 +3.3 76,406 - ABIE41_RS00430 0.75 +0.6 76,406 - ABIE41_RS00430 0.75 +0.5 76,422 - ABIE41_RS00430 0.77 +0.2 76,519 + ABIE41_RS00430 0.88 +0.2 76,519 + ABIE41_RS00430 0.88 -0.4 76,519 + ABIE41_RS00430 0.88 -2.1 76,520 - ABIE41_RS00430 0.88 -0.5 77,075 + ABIE41_RS00435 0.31 -0.2 77,097 + ABIE41_RS00435 0.33 -1.1 77,098 - ABIE41_RS00435 0.33 +0.3 77,154 + ABIE41_RS00435 0.38 -0.1 77,154 + ABIE41_RS00435 0.38 -1.6 77,154 + ABIE41_RS00435 0.38 -0.6 77,154 + ABIE41_RS00435 0.38 -0.4 77,154 + ABIE41_RS00435 0.38 -0.6 77,155 - ABIE41_RS00435 0.38 -0.5 77,155 - ABIE41_RS00435 0.38 -1.2 77,155 - ABIE41_RS00435 0.38 -0.1 77,384 - ABIE41_RS00435 0.58 -0.2 77,673 + ABIE41_RS00435 0.82 +0.3 77,673 + ABIE41_RS00435 0.82 +0.0 77,673 + ABIE41_RS00435 0.82 +0.2 77,673 + ABIE41_RS00435 0.82 +0.2 77,673 + ABIE41_RS00435 0.82 -0.5 77,673 + ABIE41_RS00435 0.82 +0.3 77,673 + ABIE41_RS00435 0.82 -1.6 77,673 + ABIE41_RS00435 0.82 -2.1 77,674 - ABIE41_RS00435 0.82 -1.6 77,674 - ABIE41_RS00435 0.82 -0.4 77,674 - ABIE41_RS00435 0.82 +2.0 77,674 - ABIE41_RS00435 0.82 +2.3 77,674 - ABIE41_RS00435 0.82 +0.5 77,674 - ABIE41_RS00435 0.82 +0.0 77,674 - ABIE41_RS00435 0.82 -1.2 77,674 - ABIE41_RS00435 0.82 +0.5 77,674 - ABIE41_RS00435 0.82 +0.2 77,674 - ABIE41_RS00435 0.82 -0.7 77,685 + ABIE41_RS00435 0.83 +2.0 77,685 + ABIE41_RS00435 0.83 -1.8 77,686 - ABIE41_RS00435 0.83 -0.9 77,859 + -0.7 77,859 + +0.4 77,859 + +0.1 77,859 + -0.0 77,860 - +0.8 78,172 + ABIE41_RS00440 0.18 +0.5 78,173 - ABIE41_RS00440 0.18 -0.8 78,173 - ABIE41_RS00440 0.18 -0.9 78,173 - ABIE41_RS00440 0.18 -1.5 78,251 + ABIE41_RS00440 0.26 +2.2 78,251 + ABIE41_RS00440 0.26 -0.6 78,252 - ABIE41_RS00440 0.26 -0.5 78,252 - ABIE41_RS00440 0.26 -0.1 78,629 + ABIE41_RS00440 0.67 +0.2 78,629 + ABIE41_RS00440 0.67 -0.5 78,629 + ABIE41_RS00440 0.67 -0.6 78,629 + ABIE41_RS00440 0.67 +3.0 78,629 + ABIE41_RS00440 0.67 +0.7 78,629 + ABIE41_RS00440 0.67 -0.9 78,630 - ABIE41_RS00440 0.67 -0.9 78,630 - ABIE41_RS00440 0.67 +0.1 78,630 - ABIE41_RS00440 0.67 +0.5 78,699 - ABIE41_RS00440 0.75 +0.7
Or see this region's nucleotide sequence