Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20020

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20015 and ABIE41_RS20020 are separated by 80 nucleotidesABIE41_RS20020 and ABIE41_RS20025 are separated by 188 nucleotides ABIE41_RS20015: ABIE41_RS20015 - shikimate dehydrogenase, at 4,113,499 to 4,114,383 _RS20015 ABIE41_RS20020: ABIE41_RS20020 - ABC transporter substrate-binding protein, at 4,114,464 to 4,115,600 _RS20020 ABIE41_RS20025: ABIE41_RS20025 - branched-chain amino acid ABC transporter permease, at 4,115,789 to 4,116,667 _RS20025 Position (kb) 4114 4115 4116Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4113.465 kb on + strandat 4113.466 kb on - strandat 4113.628 kb on + strand, within ABIE41_RS20015at 4113.628 kb on + strand, within ABIE41_RS20015at 4113.628 kb on + strand, within ABIE41_RS20015at 4113.629 kb on - strand, within ABIE41_RS20015at 4113.629 kb on - strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.724 kb on + strand, within ABIE41_RS20015at 4113.725 kb on - strand, within ABIE41_RS20015at 4113.725 kb on - strand, within ABIE41_RS20015at 4113.725 kb on - strand, within ABIE41_RS20015at 4113.725 kb on - strand, within ABIE41_RS20015at 4113.730 kb on + strand, within ABIE41_RS20015at 4113.730 kb on + strand, within ABIE41_RS20015at 4113.806 kb on + strand, within ABIE41_RS20015at 4113.807 kb on - strand, within ABIE41_RS20015at 4113.807 kb on - strand, within ABIE41_RS20015at 4113.865 kb on + strand, within ABIE41_RS20015at 4113.982 kb on + strand, within ABIE41_RS20015at 4113.983 kb on - strand, within ABIE41_RS20015at 4113.983 kb on - strand, within ABIE41_RS20015at 4113.983 kb on - strand, within ABIE41_RS20015at 4113.983 kb on - strand, within ABIE41_RS20015at 4114.157 kb on + strand, within ABIE41_RS20015at 4114.185 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.186 kb on + strand, within ABIE41_RS20015at 4114.187 kb on - strand, within ABIE41_RS20015at 4114.674 kb on + strand, within ABIE41_RS20020at 4114.674 kb on + strand, within ABIE41_RS20020at 4114.674 kb on + strand, within ABIE41_RS20020at 4114.675 kb on - strand, within ABIE41_RS20020at 4114.740 kb on + strand, within ABIE41_RS20020at 4114.740 kb on + strand, within ABIE41_RS20020at 4114.740 kb on + strand, within ABIE41_RS20020at 4114.741 kb on - strand, within ABIE41_RS20020at 4114.741 kb on - strand, within ABIE41_RS20020at 4114.741 kb on - strand, within ABIE41_RS20020at 4114.741 kb on - strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.917 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.125 kb on - strand, within ABIE41_RS20020at 4115.335 kb on - strand, within ABIE41_RS20020at 4115.335 kb on - strand, within ABIE41_RS20020at 4115.341 kb on - strand, within ABIE41_RS20020at 4115.341 kb on - strand, within ABIE41_RS20020at 4115.370 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.384 kb on + strand, within ABIE41_RS20020at 4115.384 kb on + strand, within ABIE41_RS20020at 4115.385 kb on - strand, within ABIE41_RS20020at 4115.385 kb on - strand, within ABIE41_RS20020at 4115.617 kb on - strandat 4115.754 kb on + strandat 4115.755 kb on - strandat 4115.755 kb on - strandat 4115.755 kb on - strandat 4115.755 kb on - strandat 4115.807 kb on + strandat 4115.808 kb on - strandat 4115.808 kb on - strandat 4115.840 kb on + strandat 4115.840 kb on + strandat 4115.841 kb on - strandat 4115.841 kb on - strandat 4115.841 kb on - strandat 4115.841 kb on - strandat 4116.016 kb on - strand, within ABIE41_RS20025at 4116.114 kb on - strand, within ABIE41_RS20025at 4116.532 kb on - strand, within ABIE41_RS20025at 4116.560 kb on + strand, within ABIE41_RS20025at 4116.560 kb on + strand, within ABIE41_RS20025at 4116.560 kb on + strand, within ABIE41_RS20025at 4116.561 kb on - strand, within ABIE41_RS20025at 4116.561 kb on - strand, within ABIE41_RS20025

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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4,113,465 + -0.6
4,113,466 - -0.0
4,113,628 + ABIE41_RS20015 0.15 +0.4
4,113,628 + ABIE41_RS20015 0.15 -2.0
4,113,628 + ABIE41_RS20015 0.15 -0.3
4,113,629 - ABIE41_RS20015 0.15 +0.2
4,113,629 - ABIE41_RS20015 0.15 +0.0
4,113,724 + ABIE41_RS20015 0.25 -0.5
4,113,724 + ABIE41_RS20015 0.25 +1.2
4,113,724 + ABIE41_RS20015 0.25 -1.2
4,113,724 + ABIE41_RS20015 0.25 +0.2
4,113,724 + ABIE41_RS20015 0.25 -0.2
4,113,725 - ABIE41_RS20015 0.26 -0.4
4,113,725 - ABIE41_RS20015 0.26 +0.9
4,113,725 - ABIE41_RS20015 0.26 -1.0
4,113,725 - ABIE41_RS20015 0.26 -0.5
4,113,730 + ABIE41_RS20015 0.26 -0.5
4,113,730 + ABIE41_RS20015 0.26 -2.3
4,113,806 + ABIE41_RS20015 0.35 -0.3
4,113,807 - ABIE41_RS20015 0.35 -0.1
4,113,807 - ABIE41_RS20015 0.35 -0.1
4,113,865 + ABIE41_RS20015 0.41 +0.1
4,113,982 + ABIE41_RS20015 0.55 -0.8
4,113,983 - ABIE41_RS20015 0.55 -0.6
4,113,983 - ABIE41_RS20015 0.55 -0.7
4,113,983 - ABIE41_RS20015 0.55 +0.3
4,113,983 - ABIE41_RS20015 0.55 +1.1
4,114,157 + ABIE41_RS20015 0.74 -0.0
4,114,185 + ABIE41_RS20015 0.78 +0.1
4,114,186 + ABIE41_RS20015 0.78 -0.6
4,114,186 + ABIE41_RS20015 0.78 -0.2
4,114,186 + ABIE41_RS20015 0.78 -0.1
4,114,186 + ABIE41_RS20015 0.78 +0.3
4,114,186 + ABIE41_RS20015 0.78 -0.4
4,114,187 - ABIE41_RS20015 0.78 +0.4
4,114,674 + ABIE41_RS20020 0.18 +1.2
4,114,674 + ABIE41_RS20020 0.18 +0.7
4,114,674 + ABIE41_RS20020 0.18 -1.1
4,114,675 - ABIE41_RS20020 0.19 +0.1
4,114,740 + ABIE41_RS20020 0.24 -0.4
4,114,740 + ABIE41_RS20020 0.24 -0.4
4,114,740 + ABIE41_RS20020 0.24 -0.1
4,114,741 - ABIE41_RS20020 0.24 -0.2
4,114,741 - ABIE41_RS20020 0.24 +1.5
4,114,741 - ABIE41_RS20020 0.24 -1.5
4,114,741 - ABIE41_RS20020 0.24 -0.4
4,114,863 + ABIE41_RS20020 0.35 +0.2
4,114,863 + ABIE41_RS20020 0.35 +0.4
4,114,863 + ABIE41_RS20020 0.35 -0.4
4,114,863 + ABIE41_RS20020 0.35 +1.6
4,114,863 + ABIE41_RS20020 0.35 +3.3
4,114,864 - ABIE41_RS20020 0.35 +1.1
4,114,864 - ABIE41_RS20020 0.35 +0.4
4,114,864 - ABIE41_RS20020 0.35 -0.2
4,114,864 - ABIE41_RS20020 0.35 -0.3
4,114,864 - ABIE41_RS20020 0.35 -0.9
4,114,864 - ABIE41_RS20020 0.35 +0.3
4,114,864 - ABIE41_RS20020 0.35 -0.3
4,114,864 - ABIE41_RS20020 0.35 -1.1
4,114,917 + ABIE41_RS20020 0.40 -0.0
4,115,124 + ABIE41_RS20020 0.58 -1.2
4,115,124 + ABIE41_RS20020 0.58 +0.2
4,115,124 + ABIE41_RS20020 0.58 -0.3
4,115,125 - ABIE41_RS20020 0.58 -2.0
4,115,335 - ABIE41_RS20020 0.77 +0.1
4,115,335 - ABIE41_RS20020 0.77 -0.2
4,115,341 - ABIE41_RS20020 0.77 -0.4
4,115,341 - ABIE41_RS20020 0.77 -0.7
4,115,370 + ABIE41_RS20020 0.80 +1.7
4,115,382 + ABIE41_RS20020 0.81 -0.5
4,115,382 + ABIE41_RS20020 0.81 +0.0
4,115,382 + ABIE41_RS20020 0.81 +0.1
4,115,382 + ABIE41_RS20020 0.81 +0.2
4,115,383 - ABIE41_RS20020 0.81 -0.0
4,115,383 - ABIE41_RS20020 0.81 -0.8
4,115,383 - ABIE41_RS20020 0.81 -0.4
4,115,383 - ABIE41_RS20020 0.81 -0.8
4,115,383 - ABIE41_RS20020 0.81 +2.2
4,115,383 - ABIE41_RS20020 0.81 -0.3
4,115,383 - ABIE41_RS20020 0.81 -0.4
4,115,383 - ABIE41_RS20020 0.81 -0.1
4,115,384 + ABIE41_RS20020 0.81 -0.3
4,115,384 + ABIE41_RS20020 0.81 +0.1
4,115,385 - ABIE41_RS20020 0.81 +0.1
4,115,385 - ABIE41_RS20020 0.81 +0.0
4,115,617 - +0.8
4,115,754 + +0.7
4,115,755 - -0.0
4,115,755 - -0.2
4,115,755 - +1.7
4,115,755 - +1.5
4,115,807 + +0.8
4,115,808 - -0.2
4,115,808 - +0.9
4,115,840 + -0.5
4,115,840 + -0.4
4,115,841 - +1.7
4,115,841 - +0.8
4,115,841 - +0.7
4,115,841 - -0.4
4,116,016 - ABIE41_RS20025 0.26 +1.1
4,116,114 - ABIE41_RS20025 0.37 -1.0
4,116,532 - ABIE41_RS20025 0.85 -0.7
4,116,560 + ABIE41_RS20025 0.88 -0.2
4,116,560 + ABIE41_RS20025 0.88 +0.2
4,116,560 + ABIE41_RS20025 0.88 -1.1
4,116,561 - ABIE41_RS20025 0.88 +0.2
4,116,561 - ABIE41_RS20025 0.88 -0.5

Or see this region's nucleotide sequence