Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16150 and ABIE41_RS16155 are separated by 132 nucleotides ABIE41_RS16155 and ABIE41_RS16160 are separated by 636 nucleotides
ABIE41_RS16150: ABIE41_RS16150 - penicillin-binding protein 1A, at 3,309,336 to 3,311,783
_RS16150
ABIE41_RS16155: ABIE41_RS16155 - N-acetylmuramoyl-L-alanine amidase, at 3,311,916 to 3,313,196
_RS16155
ABIE41_RS16160: ABIE41_RS16160 - ribonuclease E/G, at 3,313,833 to 3,316,586
_RS16160
Position (kb)
3311
3312
3313
3314 Strain fitness (log2 ratio)
-2
-1
0
1 at 3311.077 kb on + strand, within ABIE41_RS16150 at 3311.077 kb on + strand, within ABIE41_RS16150 at 3311.228 kb on - strand, within ABIE41_RS16150 at 3311.276 kb on - strand, within ABIE41_RS16150 at 3311.501 kb on - strand, within ABIE41_RS16150 at 3311.969 kb on - strand at 3311.969 kb on - strand at 3311.969 kb on - strand at 3312.058 kb on + strand, within ABIE41_RS16155 at 3312.059 kb on - strand, within ABIE41_RS16155 at 3312.059 kb on - strand, within ABIE41_RS16155 at 3312.129 kb on + strand, within ABIE41_RS16155 at 3312.129 kb on + strand, within ABIE41_RS16155 at 3312.129 kb on + strand, within ABIE41_RS16155 at 3312.130 kb on - strand, within ABIE41_RS16155 at 3312.249 kb on - strand, within ABIE41_RS16155 at 3312.249 kb on - strand, within ABIE41_RS16155 at 3312.344 kb on + strand, within ABIE41_RS16155 at 3312.345 kb on - strand, within ABIE41_RS16155 at 3312.345 kb on - strand, within ABIE41_RS16155 at 3312.347 kb on - strand, within ABIE41_RS16155 at 3312.347 kb on - strand, within ABIE41_RS16155 at 3312.347 kb on - strand, within ABIE41_RS16155 at 3313.245 kb on + strand at 3313.245 kb on + strand at 3313.246 kb on - strand at 3313.246 kb on - strand at 3313.246 kb on - strand at 3313.347 kb on + strand at 3313.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 3,311,077 + ABIE41_RS16150 0.71 +0.1 3,311,077 + ABIE41_RS16150 0.71 -2.5 3,311,228 - ABIE41_RS16150 0.77 -0.9 3,311,276 - ABIE41_RS16150 0.79 -2.4 3,311,501 - ABIE41_RS16150 0.88 -1.9 3,311,969 - +0.3 3,311,969 - -1.1 3,311,969 - -0.2 3,312,058 + ABIE41_RS16155 0.11 +0.6 3,312,059 - ABIE41_RS16155 0.11 -1.7 3,312,059 - ABIE41_RS16155 0.11 -0.2 3,312,129 + ABIE41_RS16155 0.17 -0.6 3,312,129 + ABIE41_RS16155 0.17 +0.1 3,312,129 + ABIE41_RS16155 0.17 -0.6 3,312,130 - ABIE41_RS16155 0.17 +0.1 3,312,249 - ABIE41_RS16155 0.26 -0.6 3,312,249 - ABIE41_RS16155 0.26 -0.7 3,312,344 + ABIE41_RS16155 0.33 -0.8 3,312,345 - ABIE41_RS16155 0.33 +0.2 3,312,345 - ABIE41_RS16155 0.33 -0.5 3,312,347 - ABIE41_RS16155 0.34 +0.0 3,312,347 - ABIE41_RS16155 0.34 -0.4 3,312,347 - ABIE41_RS16155 0.34 -0.5 3,313,245 + +0.0 3,313,245 + -0.4 3,313,246 - +1.7 3,313,246 - -0.7 3,313,246 - +0.2 3,313,347 + +0.6 3,313,828 + -0.6
Or see this region's nucleotide sequence