Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13785

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13775 and ABIE41_RS13780 are separated by 79 nucleotidesABIE41_RS13780 and ABIE41_RS13785 are separated by 25 nucleotidesABIE41_RS13785 and ABIE41_RS13790 are separated by 102 nucleotidesABIE41_RS13790 and ABIE41_RS13795 are separated by 90 nucleotides ABIE41_RS13775: ABIE41_RS13775 - usg protein, at 2,825,454 to 2,825,723 _RS13775 ABIE41_RS13780: ABIE41_RS13780 - exopolysaccharide biosynthesis protein, at 2,825,803 to 2,826,402 _RS13780 ABIE41_RS13785: ABIE41_RS13785 - EAL domain-containing protein, at 2,826,428 to 2,828,647 _RS13785 ABIE41_RS13790: ABIE41_RS13790 - proteasome-type protease, at 2,828,750 to 2,829,499 _RS13790 ABIE41_RS13795: ABIE41_RS13795 - transglutaminase family protein, at 2,829,590 to 2,830,417 _RS13795 Position (kb) 2826 2827 2828 2829Strain fitness (log2 ratio) -1 0 1 2at 2825.553 kb on + strand, within ABIE41_RS13775at 2825.553 kb on + strand, within ABIE41_RS13775at 2825.553 kb on + strand, within ABIE41_RS13775at 2825.554 kb on - strand, within ABIE41_RS13775at 2825.554 kb on - strand, within ABIE41_RS13775at 2825.554 kb on - strand, within ABIE41_RS13775at 2825.554 kb on - strand, within ABIE41_RS13775at 2825.555 kb on + strand, within ABIE41_RS13775at 2825.568 kb on + strand, within ABIE41_RS13775at 2825.568 kb on + strand, within ABIE41_RS13775at 2825.768 kb on - strandat 2826.166 kb on + strand, within ABIE41_RS13780at 2826.166 kb on + strand, within ABIE41_RS13780at 2826.167 kb on - strand, within ABIE41_RS13780at 2826.364 kb on + strandat 2826.666 kb on + strand, within ABIE41_RS13785at 2826.666 kb on + strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.667 kb on - strand, within ABIE41_RS13785at 2826.720 kb on + strand, within ABIE41_RS13785at 2826.721 kb on - strand, within ABIE41_RS13785at 2827.146 kb on + strand, within ABIE41_RS13785at 2827.146 kb on + strand, within ABIE41_RS13785at 2827.146 kb on + strand, within ABIE41_RS13785at 2827.147 kb on - strand, within ABIE41_RS13785at 2827.572 kb on + strand, within ABIE41_RS13785at 2827.572 kb on + strand, within ABIE41_RS13785at 2827.572 kb on + strand, within ABIE41_RS13785at 2827.572 kb on + strand, within ABIE41_RS13785at 2827.572 kb on + strand, within ABIE41_RS13785at 2827.573 kb on - strand, within ABIE41_RS13785at 2827.573 kb on - strand, within ABIE41_RS13785at 2827.573 kb on - strand, within ABIE41_RS13785at 2827.573 kb on - strand, within ABIE41_RS13785at 2828.235 kb on + strand, within ABIE41_RS13785at 2828.304 kb on + strand, within ABIE41_RS13785at 2828.304 kb on + strand, within ABIE41_RS13785at 2828.304 kb on + strand, within ABIE41_RS13785at 2828.305 kb on - strand, within ABIE41_RS13785at 2828.305 kb on - strand, within ABIE41_RS13785at 2828.690 kb on + strandat 2828.691 kb on - strandat 2828.691 kb on - strandat 2828.691 kb on - strandat 2828.691 kb on - strandat 2828.691 kb on - strandat 2828.732 kb on + strandat 2828.732 kb on + strandat 2828.733 kb on - strandat 2828.733 kb on - strandat 2828.841 kb on + strand, within ABIE41_RS13790at 2828.841 kb on + strand, within ABIE41_RS13790at 2828.841 kb on + strand, within ABIE41_RS13790at 2828.842 kb on - strand, within ABIE41_RS13790at 2828.985 kb on + strand, within ABIE41_RS13790at 2829.033 kb on + strand, within ABIE41_RS13790at 2829.034 kb on - strand, within ABIE41_RS13790at 2829.099 kb on + strand, within ABIE41_RS13790at 2829.100 kb on - strand, within ABIE41_RS13790at 2829.100 kb on - strand, within ABIE41_RS13790at 2829.100 kb on - strand, within ABIE41_RS13790at 2829.492 kb on + strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.493 kb on - strandat 2829.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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2,825,553 + ABIE41_RS13775 0.37 -1.7
2,825,553 + ABIE41_RS13775 0.37 -1.0
2,825,553 + ABIE41_RS13775 0.37 -0.1
2,825,554 - ABIE41_RS13775 0.37 +0.5
2,825,554 - ABIE41_RS13775 0.37 -0.8
2,825,554 - ABIE41_RS13775 0.37 -0.1
2,825,554 - ABIE41_RS13775 0.37 -0.1
2,825,555 + ABIE41_RS13775 0.37 +1.7
2,825,568 + ABIE41_RS13775 0.42 +0.5
2,825,568 + ABIE41_RS13775 0.42 +0.3
2,825,768 - -1.1
2,826,166 + ABIE41_RS13780 0.60 -1.0
2,826,166 + ABIE41_RS13780 0.60 -0.2
2,826,167 - ABIE41_RS13780 0.61 +1.2
2,826,364 + -0.9
2,826,666 + ABIE41_RS13785 0.11 +1.7
2,826,666 + ABIE41_RS13785 0.11 -0.2
2,826,667 - ABIE41_RS13785 0.11 -0.3
2,826,667 - ABIE41_RS13785 0.11 +0.3
2,826,667 - ABIE41_RS13785 0.11 +1.6
2,826,667 - ABIE41_RS13785 0.11 +0.5
2,826,667 - ABIE41_RS13785 0.11 +0.4
2,826,667 - ABIE41_RS13785 0.11 +1.1
2,826,667 - ABIE41_RS13785 0.11 -0.1
2,826,720 + ABIE41_RS13785 0.13 -0.3
2,826,721 - ABIE41_RS13785 0.13 +0.3
2,827,146 + ABIE41_RS13785 0.32 +0.2
2,827,146 + ABIE41_RS13785 0.32 -0.4
2,827,146 + ABIE41_RS13785 0.32 -0.6
2,827,147 - ABIE41_RS13785 0.32 +0.6
2,827,572 + ABIE41_RS13785 0.52 +0.1
2,827,572 + ABIE41_RS13785 0.52 +1.6
2,827,572 + ABIE41_RS13785 0.52 -0.5
2,827,572 + ABIE41_RS13785 0.52 -0.3
2,827,572 + ABIE41_RS13785 0.52 +0.2
2,827,573 - ABIE41_RS13785 0.52 -0.4
2,827,573 - ABIE41_RS13785 0.52 +0.2
2,827,573 - ABIE41_RS13785 0.52 -0.6
2,827,573 - ABIE41_RS13785 0.52 -0.6
2,828,235 + ABIE41_RS13785 0.81 +0.0
2,828,304 + ABIE41_RS13785 0.85 -0.2
2,828,304 + ABIE41_RS13785 0.85 -1.2
2,828,304 + ABIE41_RS13785 0.85 -0.1
2,828,305 - ABIE41_RS13785 0.85 -0.0
2,828,305 - ABIE41_RS13785 0.85 -0.1
2,828,690 + -0.5
2,828,691 - +0.6
2,828,691 - +1.0
2,828,691 - -0.5
2,828,691 - +0.6
2,828,691 - +2.0
2,828,732 + +0.3
2,828,732 + -0.3
2,828,733 - +1.8
2,828,733 - -0.7
2,828,841 + ABIE41_RS13790 0.12 +1.2
2,828,841 + ABIE41_RS13790 0.12 +0.3
2,828,841 + ABIE41_RS13790 0.12 +0.8
2,828,842 - ABIE41_RS13790 0.12 +0.5
2,828,985 + ABIE41_RS13790 0.31 +0.8
2,829,033 + ABIE41_RS13790 0.38 +0.2
2,829,034 - ABIE41_RS13790 0.38 +2.1
2,829,099 + ABIE41_RS13790 0.47 +0.0
2,829,100 - ABIE41_RS13790 0.47 +1.0
2,829,100 - ABIE41_RS13790 0.47 -1.1
2,829,100 - ABIE41_RS13790 0.47 +0.0
2,829,492 + -0.5
2,829,493 - +0.8
2,829,493 - +0.8
2,829,493 - +0.2
2,829,493 - -1.7
2,829,493 - -0.6
2,829,493 - +0.5

Or see this region's nucleotide sequence