Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09710

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09700 and ABIE41_RS09705 are separated by 263 nucleotidesABIE41_RS09705 and ABIE41_RS09710 are separated by 124 nucleotidesABIE41_RS09710 and ABIE41_RS09715 are separated by 22 nucleotides ABIE41_RS09700: ABIE41_RS09700 - dihydroorotase, at 2,004,539 to 2,005,876 _RS09700 ABIE41_RS09705: ABIE41_RS09705 - hypothetical protein, at 2,006,140 to 2,006,646 _RS09705 ABIE41_RS09710: ABIE41_RS09710 - ABC transporter ATP-binding protein, at 2,006,771 to 2,007,883 _RS09710 ABIE41_RS09715: ABIE41_RS09715 - extracellular solute-binding protein, at 2,007,906 to 2,009,036 _RS09715 Position (kb) 2006 2007 2008Strain fitness (log2 ratio) -2 -1 0 1 2at 2005.781 kb on + strandat 2005.781 kb on + strandat 2005.781 kb on + strandat 2005.781 kb on + strandat 2005.781 kb on + strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.782 kb on - strandat 2005.941 kb on + strandat 2005.941 kb on + strandat 2005.959 kb on + strandat 2005.959 kb on + strandat 2005.959 kb on + strandat 2005.960 kb on - strandat 2006.027 kb on + strandat 2006.028 kb on - strandat 2006.083 kb on + strandat 2006.084 kb on - strandat 2006.091 kb on + strandat 2006.091 kb on + strandat 2006.091 kb on + strandat 2006.091 kb on + strandat 2006.091 kb on + strandat 2006.092 kb on - strandat 2006.092 kb on - strandat 2006.092 kb on - strandat 2006.131 kb on + strandat 2006.132 kb on - strandat 2006.396 kb on + strand, within ABIE41_RS09705at 2006.396 kb on + strand, within ABIE41_RS09705at 2006.397 kb on - strand, within ABIE41_RS09705at 2006.397 kb on - strand, within ABIE41_RS09705at 2006.398 kb on + strand, within ABIE41_RS09705at 2006.476 kb on + strand, within ABIE41_RS09705at 2006.477 kb on - strand, within ABIE41_RS09705at 2006.657 kb on + strandat 2006.657 kb on + strandat 2006.657 kb on + strandat 2006.658 kb on - strandat 2006.689 kb on + strandat 2007.053 kb on + strand, within ABIE41_RS09710at 2007.053 kb on + strand, within ABIE41_RS09710at 2007.054 kb on - strand, within ABIE41_RS09710at 2007.054 kb on - strand, within ABIE41_RS09710at 2007.070 kb on + strand, within ABIE41_RS09710at 2007.071 kb on - strand, within ABIE41_RS09710at 2007.071 kb on - strand, within ABIE41_RS09710at 2007.071 kb on - strand, within ABIE41_RS09710at 2007.071 kb on - strand, within ABIE41_RS09710at 2007.180 kb on - strand, within ABIE41_RS09710at 2007.467 kb on + strand, within ABIE41_RS09710at 2007.467 kb on + strand, within ABIE41_RS09710at 2007.467 kb on + strand, within ABIE41_RS09710at 2007.467 kb on + strand, within ABIE41_RS09710at 2007.467 kb on + strand, within ABIE41_RS09710at 2007.467 kb on + strand, within ABIE41_RS09710at 2007.468 kb on - strand, within ABIE41_RS09710at 2007.468 kb on - strand, within ABIE41_RS09710at 2007.468 kb on - strand, within ABIE41_RS09710at 2007.468 kb on - strand, within ABIE41_RS09710at 2007.468 kb on - strand, within ABIE41_RS09710at 2007.468 kb on - strand, within ABIE41_RS09710at 2007.468 kb on - strand, within ABIE41_RS09710at 2007.636 kb on - strand, within ABIE41_RS09710at 2007.740 kb on + strand, within ABIE41_RS09710at 2007.741 kb on - strand, within ABIE41_RS09710at 2008.014 kb on + strandat 2008.014 kb on + strandat 2008.014 kb on + strandat 2008.014 kb on + strandat 2008.015 kb on - strandat 2008.015 kb on - strandat 2008.224 kb on + strand, within ABIE41_RS09715at 2008.224 kb on + strand, within ABIE41_RS09715at 2008.224 kb on + strand, within ABIE41_RS09715at 2008.224 kb on + strand, within ABIE41_RS09715at 2008.224 kb on + strand, within ABIE41_RS09715at 2008.224 kb on + strand, within ABIE41_RS09715at 2008.224 kb on + strand, within ABIE41_RS09715at 2008.225 kb on - strand, within ABIE41_RS09715at 2008.225 kb on - strand, within ABIE41_RS09715at 2008.225 kb on - strand, within ABIE41_RS09715at 2008.225 kb on - strand, within ABIE41_RS09715at 2008.303 kb on - strand, within ABIE41_RS09715at 2008.303 kb on - strand, within ABIE41_RS09715at 2008.341 kb on + strand, within ABIE41_RS09715at 2008.341 kb on + strand, within ABIE41_RS09715at 2008.342 kb on - strand, within ABIE41_RS09715at 2008.342 kb on - strand, within ABIE41_RS09715at 2008.342 kb on - strand, within ABIE41_RS09715at 2008.425 kb on + strand, within ABIE41_RS09715at 2008.425 kb on + strand, within ABIE41_RS09715at 2008.426 kb on - strand, within ABIE41_RS09715at 2008.428 kb on - strand, within ABIE41_RS09715at 2008.445 kb on + strand, within ABIE41_RS09715at 2008.479 kb on + strand, within ABIE41_RS09715at 2008.479 kb on + strand, within ABIE41_RS09715at 2008.480 kb on - strand, within ABIE41_RS09715at 2008.480 kb on - strand, within ABIE41_RS09715at 2008.521 kb on + strand, within ABIE41_RS09715at 2008.521 kb on + strand, within ABIE41_RS09715at 2008.522 kb on - strand, within ABIE41_RS09715at 2008.674 kb on + strand, within ABIE41_RS09715at 2008.674 kb on + strand, within ABIE41_RS09715at 2008.674 kb on + strand, within ABIE41_RS09715at 2008.675 kb on - strand, within ABIE41_RS09715at 2008.675 kb on - strand, within ABIE41_RS09715at 2008.675 kb on - strand, within ABIE41_RS09715at 2008.675 kb on - strand, within ABIE41_RS09715at 2008.755 kb on + strand, within ABIE41_RS09715at 2008.755 kb on + strand, within ABIE41_RS09715at 2008.755 kb on + strand, within ABIE41_RS09715at 2008.756 kb on - strand, within ABIE41_RS09715at 2008.756 kb on - strand, within ABIE41_RS09715at 2008.756 kb on - strand, within ABIE41_RS09715at 2008.756 kb on - strand, within ABIE41_RS09715at 2008.756 kb on - strand, within ABIE41_RS09715at 2008.756 kb on - strand, within ABIE41_RS09715at 2008.757 kb on - strand, within ABIE41_RS09715at 2008.758 kb on + strand, within ABIE41_RS09715at 2008.758 kb on + strand, within ABIE41_RS09715at 2008.759 kb on - strand, within ABIE41_RS09715

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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2,005,781 + -1.8
2,005,781 + -0.8
2,005,781 + +0.1
2,005,781 + -0.3
2,005,781 + +0.5
2,005,782 - -0.7
2,005,782 - +0.9
2,005,782 - -0.3
2,005,782 - -0.6
2,005,782 - +0.1
2,005,782 - +1.6
2,005,782 - -0.8
2,005,782 - +0.6
2,005,782 - -0.4
2,005,782 - +2.0
2,005,782 - -1.1
2,005,941 + +0.3
2,005,941 + -1.9
2,005,959 + -0.8
2,005,959 + -0.2
2,005,959 + -1.8
2,005,960 - +2.4
2,006,027 + +0.6
2,006,028 - +1.6
2,006,083 + +0.5
2,006,084 - -0.2
2,006,091 + +0.3
2,006,091 + -0.9
2,006,091 + +0.2
2,006,091 + +0.2
2,006,091 + +0.2
2,006,092 - +0.1
2,006,092 - +0.5
2,006,092 - -0.6
2,006,131 + -0.4
2,006,132 - +0.8
2,006,396 + ABIE41_RS09705 0.50 -0.9
2,006,396 + ABIE41_RS09705 0.50 -0.2
2,006,397 - ABIE41_RS09705 0.51 +0.8
2,006,397 - ABIE41_RS09705 0.51 -0.3
2,006,398 + ABIE41_RS09705 0.51 +1.2
2,006,476 + ABIE41_RS09705 0.66 +0.7
2,006,477 - ABIE41_RS09705 0.66 -0.0
2,006,657 + -0.4
2,006,657 + -0.1
2,006,657 + +0.8
2,006,658 - +1.3
2,006,689 + +0.5
2,007,053 + ABIE41_RS09710 0.25 -0.3
2,007,053 + ABIE41_RS09710 0.25 +0.6
2,007,054 - ABIE41_RS09710 0.25 +0.3
2,007,054 - ABIE41_RS09710 0.25 -0.0
2,007,070 + ABIE41_RS09710 0.27 +0.2
2,007,071 - ABIE41_RS09710 0.27 -0.4
2,007,071 - ABIE41_RS09710 0.27 -0.3
2,007,071 - ABIE41_RS09710 0.27 -1.5
2,007,071 - ABIE41_RS09710 0.27 +0.1
2,007,180 - ABIE41_RS09710 0.37 +0.8
2,007,467 + ABIE41_RS09710 0.63 +0.6
2,007,467 + ABIE41_RS09710 0.63 +0.1
2,007,467 + ABIE41_RS09710 0.63 +0.2
2,007,467 + ABIE41_RS09710 0.63 -0.4
2,007,467 + ABIE41_RS09710 0.63 +1.1
2,007,467 + ABIE41_RS09710 0.63 +0.1
2,007,468 - ABIE41_RS09710 0.63 -0.3
2,007,468 - ABIE41_RS09710 0.63 +1.6
2,007,468 - ABIE41_RS09710 0.63 +0.0
2,007,468 - ABIE41_RS09710 0.63 +0.6
2,007,468 - ABIE41_RS09710 0.63 -0.3
2,007,468 - ABIE41_RS09710 0.63 +2.6
2,007,468 - ABIE41_RS09710 0.63 -1.9
2,007,636 - ABIE41_RS09710 0.78 -0.3
2,007,740 + ABIE41_RS09710 0.87 +1.1
2,007,741 - ABIE41_RS09710 0.87 +0.1
2,008,014 + -0.1
2,008,014 + -0.2
2,008,014 + +1.8
2,008,014 + +0.8
2,008,015 - +0.3
2,008,015 - +0.2
2,008,224 + ABIE41_RS09715 0.28 +0.2
2,008,224 + ABIE41_RS09715 0.28 +0.7
2,008,224 + ABIE41_RS09715 0.28 +0.3
2,008,224 + ABIE41_RS09715 0.28 +0.0
2,008,224 + ABIE41_RS09715 0.28 -0.2
2,008,224 + ABIE41_RS09715 0.28 +0.2
2,008,224 + ABIE41_RS09715 0.28 +0.5
2,008,225 - ABIE41_RS09715 0.28 +1.6
2,008,225 - ABIE41_RS09715 0.28 +0.2
2,008,225 - ABIE41_RS09715 0.28 +0.1
2,008,225 - ABIE41_RS09715 0.28 -0.4
2,008,303 - ABIE41_RS09715 0.35 -1.3
2,008,303 - ABIE41_RS09715 0.35 -1.6
2,008,341 + ABIE41_RS09715 0.38 -0.2
2,008,341 + ABIE41_RS09715 0.38 +0.1
2,008,342 - ABIE41_RS09715 0.39 -1.2
2,008,342 - ABIE41_RS09715 0.39 +0.4
2,008,342 - ABIE41_RS09715 0.39 -1.4
2,008,425 + ABIE41_RS09715 0.46 -0.6
2,008,425 + ABIE41_RS09715 0.46 +0.4
2,008,426 - ABIE41_RS09715 0.46 +0.3
2,008,428 - ABIE41_RS09715 0.46 -0.3
2,008,445 + ABIE41_RS09715 0.48 -0.1
2,008,479 + ABIE41_RS09715 0.51 +0.3
2,008,479 + ABIE41_RS09715 0.51 +0.7
2,008,480 - ABIE41_RS09715 0.51 +0.8
2,008,480 - ABIE41_RS09715 0.51 -0.6
2,008,521 + ABIE41_RS09715 0.54 +0.4
2,008,521 + ABIE41_RS09715 0.54 +0.1
2,008,522 - ABIE41_RS09715 0.54 +0.1
2,008,674 + ABIE41_RS09715 0.68 +0.9
2,008,674 + ABIE41_RS09715 0.68 -1.2
2,008,674 + ABIE41_RS09715 0.68 +0.2
2,008,675 - ABIE41_RS09715 0.68 -0.5
2,008,675 - ABIE41_RS09715 0.68 -0.8
2,008,675 - ABIE41_RS09715 0.68 +0.1
2,008,675 - ABIE41_RS09715 0.68 +0.4
2,008,755 + ABIE41_RS09715 0.75 +0.5
2,008,755 + ABIE41_RS09715 0.75 -1.1
2,008,755 + ABIE41_RS09715 0.75 -1.5
2,008,756 - ABIE41_RS09715 0.75 -0.1
2,008,756 - ABIE41_RS09715 0.75 -0.3
2,008,756 - ABIE41_RS09715 0.75 +0.8
2,008,756 - ABIE41_RS09715 0.75 -0.0
2,008,756 - ABIE41_RS09715 0.75 +0.0
2,008,756 - ABIE41_RS09715 0.75 +0.0
2,008,757 - ABIE41_RS09715 0.75 +0.4
2,008,758 + ABIE41_RS09715 0.75 -1.2
2,008,758 + ABIE41_RS09715 0.75 -0.9
2,008,759 - ABIE41_RS09715 0.75 +0.5

Or see this region's nucleotide sequence