Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS09700 and ABIE41_RS09705 are separated by 263 nucleotides ABIE41_RS09705 and ABIE41_RS09710 are separated by 124 nucleotides ABIE41_RS09710 and ABIE41_RS09715 are separated by 22 nucleotides
ABIE41_RS09700: ABIE41_RS09700 - dihydroorotase, at 2,004,539 to 2,005,876
_RS09700
ABIE41_RS09705: ABIE41_RS09705 - hypothetical protein, at 2,006,140 to 2,006,646
_RS09705
ABIE41_RS09710: ABIE41_RS09710 - ABC transporter ATP-binding protein, at 2,006,771 to 2,007,883
_RS09710
ABIE41_RS09715: ABIE41_RS09715 - extracellular solute-binding protein, at 2,007,906 to 2,009,036
_RS09715
Position (kb)
2006
2007
2008 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2005.781 kb on + strand at 2005.781 kb on + strand at 2005.781 kb on + strand at 2005.781 kb on + strand at 2005.781 kb on + strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.782 kb on - strand at 2005.941 kb on + strand at 2005.941 kb on + strand at 2005.959 kb on + strand at 2005.959 kb on + strand at 2005.959 kb on + strand at 2005.960 kb on - strand at 2006.027 kb on + strand at 2006.028 kb on - strand at 2006.083 kb on + strand at 2006.084 kb on - strand at 2006.091 kb on + strand at 2006.091 kb on + strand at 2006.091 kb on + strand at 2006.091 kb on + strand at 2006.091 kb on + strand at 2006.092 kb on - strand at 2006.092 kb on - strand at 2006.092 kb on - strand at 2006.131 kb on + strand at 2006.132 kb on - strand at 2006.396 kb on + strand, within ABIE41_RS09705 at 2006.396 kb on + strand, within ABIE41_RS09705 at 2006.397 kb on - strand, within ABIE41_RS09705 at 2006.397 kb on - strand, within ABIE41_RS09705 at 2006.398 kb on + strand, within ABIE41_RS09705 at 2006.476 kb on + strand, within ABIE41_RS09705 at 2006.477 kb on - strand, within ABIE41_RS09705 at 2006.657 kb on + strand at 2006.657 kb on + strand at 2006.657 kb on + strand at 2006.658 kb on - strand at 2006.689 kb on + strand at 2007.053 kb on + strand, within ABIE41_RS09710 at 2007.053 kb on + strand, within ABIE41_RS09710 at 2007.054 kb on - strand, within ABIE41_RS09710 at 2007.054 kb on - strand, within ABIE41_RS09710 at 2007.070 kb on + strand, within ABIE41_RS09710 at 2007.071 kb on - strand, within ABIE41_RS09710 at 2007.071 kb on - strand, within ABIE41_RS09710 at 2007.071 kb on - strand, within ABIE41_RS09710 at 2007.071 kb on - strand, within ABIE41_RS09710 at 2007.180 kb on - strand, within ABIE41_RS09710 at 2007.467 kb on + strand, within ABIE41_RS09710 at 2007.467 kb on + strand, within ABIE41_RS09710 at 2007.467 kb on + strand, within ABIE41_RS09710 at 2007.467 kb on + strand, within ABIE41_RS09710 at 2007.467 kb on + strand, within ABIE41_RS09710 at 2007.467 kb on + strand, within ABIE41_RS09710 at 2007.468 kb on - strand, within ABIE41_RS09710 at 2007.468 kb on - strand, within ABIE41_RS09710 at 2007.468 kb on - strand, within ABIE41_RS09710 at 2007.468 kb on - strand, within ABIE41_RS09710 at 2007.468 kb on - strand, within ABIE41_RS09710 at 2007.468 kb on - strand, within ABIE41_RS09710 at 2007.468 kb on - strand, within ABIE41_RS09710 at 2007.636 kb on - strand, within ABIE41_RS09710 at 2007.740 kb on + strand, within ABIE41_RS09710 at 2007.741 kb on - strand, within ABIE41_RS09710 at 2008.014 kb on + strand at 2008.014 kb on + strand at 2008.014 kb on + strand at 2008.014 kb on + strand at 2008.015 kb on - strand at 2008.015 kb on - strand at 2008.224 kb on + strand, within ABIE41_RS09715 at 2008.224 kb on + strand, within ABIE41_RS09715 at 2008.224 kb on + strand, within ABIE41_RS09715 at 2008.224 kb on + strand, within ABIE41_RS09715 at 2008.224 kb on + strand, within ABIE41_RS09715 at 2008.224 kb on + strand, within ABIE41_RS09715 at 2008.224 kb on + strand, within ABIE41_RS09715 at 2008.225 kb on - strand, within ABIE41_RS09715 at 2008.225 kb on - strand, within ABIE41_RS09715 at 2008.225 kb on - strand, within ABIE41_RS09715 at 2008.225 kb on - strand, within ABIE41_RS09715 at 2008.303 kb on - strand, within ABIE41_RS09715 at 2008.303 kb on - strand, within ABIE41_RS09715 at 2008.341 kb on + strand, within ABIE41_RS09715 at 2008.341 kb on + strand, within ABIE41_RS09715 at 2008.342 kb on - strand, within ABIE41_RS09715 at 2008.342 kb on - strand, within ABIE41_RS09715 at 2008.342 kb on - strand, within ABIE41_RS09715 at 2008.425 kb on + strand, within ABIE41_RS09715 at 2008.425 kb on + strand, within ABIE41_RS09715 at 2008.426 kb on - strand, within ABIE41_RS09715 at 2008.428 kb on - strand, within ABIE41_RS09715 at 2008.445 kb on + strand, within ABIE41_RS09715 at 2008.479 kb on + strand, within ABIE41_RS09715 at 2008.479 kb on + strand, within ABIE41_RS09715 at 2008.480 kb on - strand, within ABIE41_RS09715 at 2008.480 kb on - strand, within ABIE41_RS09715 at 2008.521 kb on + strand, within ABIE41_RS09715 at 2008.521 kb on + strand, within ABIE41_RS09715 at 2008.522 kb on - strand, within ABIE41_RS09715 at 2008.674 kb on + strand, within ABIE41_RS09715 at 2008.674 kb on + strand, within ABIE41_RS09715 at 2008.674 kb on + strand, within ABIE41_RS09715 at 2008.675 kb on - strand, within ABIE41_RS09715 at 2008.675 kb on - strand, within ABIE41_RS09715 at 2008.675 kb on - strand, within ABIE41_RS09715 at 2008.675 kb on - strand, within ABIE41_RS09715 at 2008.755 kb on + strand, within ABIE41_RS09715 at 2008.755 kb on + strand, within ABIE41_RS09715 at 2008.755 kb on + strand, within ABIE41_RS09715 at 2008.756 kb on - strand, within ABIE41_RS09715 at 2008.756 kb on - strand, within ABIE41_RS09715 at 2008.756 kb on - strand, within ABIE41_RS09715 at 2008.756 kb on - strand, within ABIE41_RS09715 at 2008.756 kb on - strand, within ABIE41_RS09715 at 2008.756 kb on - strand, within ABIE41_RS09715 at 2008.757 kb on - strand, within ABIE41_RS09715 at 2008.758 kb on + strand, within ABIE41_RS09715 at 2008.758 kb on + strand, within ABIE41_RS09715 at 2008.759 kb on - strand, within ABIE41_RS09715
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 2,005,781 + -1.8 2,005,781 + -0.8 2,005,781 + +0.1 2,005,781 + -0.3 2,005,781 + +0.5 2,005,782 - -0.7 2,005,782 - +0.9 2,005,782 - -0.3 2,005,782 - -0.6 2,005,782 - +0.1 2,005,782 - +1.6 2,005,782 - -0.8 2,005,782 - +0.6 2,005,782 - -0.4 2,005,782 - +2.0 2,005,782 - -1.1 2,005,941 + +0.3 2,005,941 + -1.9 2,005,959 + -0.8 2,005,959 + -0.2 2,005,959 + -1.8 2,005,960 - +2.4 2,006,027 + +0.6 2,006,028 - +1.6 2,006,083 + +0.5 2,006,084 - -0.2 2,006,091 + +0.3 2,006,091 + -0.9 2,006,091 + +0.2 2,006,091 + +0.2 2,006,091 + +0.2 2,006,092 - +0.1 2,006,092 - +0.5 2,006,092 - -0.6 2,006,131 + -0.4 2,006,132 - +0.8 2,006,396 + ABIE41_RS09705 0.50 -0.9 2,006,396 + ABIE41_RS09705 0.50 -0.2 2,006,397 - ABIE41_RS09705 0.51 +0.8 2,006,397 - ABIE41_RS09705 0.51 -0.3 2,006,398 + ABIE41_RS09705 0.51 +1.2 2,006,476 + ABIE41_RS09705 0.66 +0.7 2,006,477 - ABIE41_RS09705 0.66 -0.0 2,006,657 + -0.4 2,006,657 + -0.1 2,006,657 + +0.8 2,006,658 - +1.3 2,006,689 + +0.5 2,007,053 + ABIE41_RS09710 0.25 -0.3 2,007,053 + ABIE41_RS09710 0.25 +0.6 2,007,054 - ABIE41_RS09710 0.25 +0.3 2,007,054 - ABIE41_RS09710 0.25 -0.0 2,007,070 + ABIE41_RS09710 0.27 +0.2 2,007,071 - ABIE41_RS09710 0.27 -0.4 2,007,071 - ABIE41_RS09710 0.27 -0.3 2,007,071 - ABIE41_RS09710 0.27 -1.5 2,007,071 - ABIE41_RS09710 0.27 +0.1 2,007,180 - ABIE41_RS09710 0.37 +0.8 2,007,467 + ABIE41_RS09710 0.63 +0.6 2,007,467 + ABIE41_RS09710 0.63 +0.1 2,007,467 + ABIE41_RS09710 0.63 +0.2 2,007,467 + ABIE41_RS09710 0.63 -0.4 2,007,467 + ABIE41_RS09710 0.63 +1.1 2,007,467 + ABIE41_RS09710 0.63 +0.1 2,007,468 - ABIE41_RS09710 0.63 -0.3 2,007,468 - ABIE41_RS09710 0.63 +1.6 2,007,468 - ABIE41_RS09710 0.63 +0.0 2,007,468 - ABIE41_RS09710 0.63 +0.6 2,007,468 - ABIE41_RS09710 0.63 -0.3 2,007,468 - ABIE41_RS09710 0.63 +2.6 2,007,468 - ABIE41_RS09710 0.63 -1.9 2,007,636 - ABIE41_RS09710 0.78 -0.3 2,007,740 + ABIE41_RS09710 0.87 +1.1 2,007,741 - ABIE41_RS09710 0.87 +0.1 2,008,014 + -0.1 2,008,014 + -0.2 2,008,014 + +1.8 2,008,014 + +0.8 2,008,015 - +0.3 2,008,015 - +0.2 2,008,224 + ABIE41_RS09715 0.28 +0.2 2,008,224 + ABIE41_RS09715 0.28 +0.7 2,008,224 + ABIE41_RS09715 0.28 +0.3 2,008,224 + ABIE41_RS09715 0.28 +0.0 2,008,224 + ABIE41_RS09715 0.28 -0.2 2,008,224 + ABIE41_RS09715 0.28 +0.2 2,008,224 + ABIE41_RS09715 0.28 +0.5 2,008,225 - ABIE41_RS09715 0.28 +1.6 2,008,225 - ABIE41_RS09715 0.28 +0.2 2,008,225 - ABIE41_RS09715 0.28 +0.1 2,008,225 - ABIE41_RS09715 0.28 -0.4 2,008,303 - ABIE41_RS09715 0.35 -1.3 2,008,303 - ABIE41_RS09715 0.35 -1.6 2,008,341 + ABIE41_RS09715 0.38 -0.2 2,008,341 + ABIE41_RS09715 0.38 +0.1 2,008,342 - ABIE41_RS09715 0.39 -1.2 2,008,342 - ABIE41_RS09715 0.39 +0.4 2,008,342 - ABIE41_RS09715 0.39 -1.4 2,008,425 + ABIE41_RS09715 0.46 -0.6 2,008,425 + ABIE41_RS09715 0.46 +0.4 2,008,426 - ABIE41_RS09715 0.46 +0.3 2,008,428 - ABIE41_RS09715 0.46 -0.3 2,008,445 + ABIE41_RS09715 0.48 -0.1 2,008,479 + ABIE41_RS09715 0.51 +0.3 2,008,479 + ABIE41_RS09715 0.51 +0.7 2,008,480 - ABIE41_RS09715 0.51 +0.8 2,008,480 - ABIE41_RS09715 0.51 -0.6 2,008,521 + ABIE41_RS09715 0.54 +0.4 2,008,521 + ABIE41_RS09715 0.54 +0.1 2,008,522 - ABIE41_RS09715 0.54 +0.1 2,008,674 + ABIE41_RS09715 0.68 +0.9 2,008,674 + ABIE41_RS09715 0.68 -1.2 2,008,674 + ABIE41_RS09715 0.68 +0.2 2,008,675 - ABIE41_RS09715 0.68 -0.5 2,008,675 - ABIE41_RS09715 0.68 -0.8 2,008,675 - ABIE41_RS09715 0.68 +0.1 2,008,675 - ABIE41_RS09715 0.68 +0.4 2,008,755 + ABIE41_RS09715 0.75 +0.5 2,008,755 + ABIE41_RS09715 0.75 -1.1 2,008,755 + ABIE41_RS09715 0.75 -1.5 2,008,756 - ABIE41_RS09715 0.75 -0.1 2,008,756 - ABIE41_RS09715 0.75 -0.3 2,008,756 - ABIE41_RS09715 0.75 +0.8 2,008,756 - ABIE41_RS09715 0.75 -0.0 2,008,756 - ABIE41_RS09715 0.75 +0.0 2,008,756 - ABIE41_RS09715 0.75 +0.0 2,008,757 - ABIE41_RS09715 0.75 +0.4 2,008,758 + ABIE41_RS09715 0.75 -1.2 2,008,758 + ABIE41_RS09715 0.75 -0.9 2,008,759 - ABIE41_RS09715 0.75 +0.5
Or see this region's nucleotide sequence