Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06060

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06055 and ABIE41_RS06060 are separated by 43 nucleotidesABIE41_RS06060 and ABIE41_RS06065 are separated by 125 nucleotides ABIE41_RS06055: ABIE41_RS06055 - DUF3772 domain-containing protein, at 1,248,488 to 1,251,106 _RS06055 ABIE41_RS06060: ABIE41_RS06060 - CAP domain-containing protein, at 1,251,150 to 1,251,635 _RS06060 ABIE41_RS06065: ABIE41_RS06065 - glucan ABC transporter ATP-binding protein/ permease, at 1,251,761 to 1,253,575 _RS06065 Position (kb) 1251 1252Strain fitness (log2 ratio) -2 -1 0 1at 1250.276 kb on + strand, within ABIE41_RS06055at 1250.277 kb on - strand, within ABIE41_RS06055at 1250.277 kb on - strand, within ABIE41_RS06055at 1250.277 kb on - strand, within ABIE41_RS06055at 1250.286 kb on - strand, within ABIE41_RS06055at 1251.206 kb on + strand, within ABIE41_RS06060at 1251.207 kb on - strand, within ABIE41_RS06060at 1251.240 kb on + strand, within ABIE41_RS06060at 1251.240 kb on + strand, within ABIE41_RS06060at 1251.583 kb on - strand, within ABIE41_RS06060at 1251.583 kb on - strand, within ABIE41_RS06060at 1251.601 kb on - strandat 1251.601 kb on - strandat 1251.747 kb on + strandat 1251.747 kb on + strandat 1251.748 kb on - strandat 1251.748 kb on - strandat 1251.779 kb on + strandat 1251.779 kb on + strandat 1251.779 kb on + strandat 1251.779 kb on + strandat 1251.779 kb on + strandat 1251.779 kb on + strandat 1251.780 kb on - strandat 1251.780 kb on - strandat 1251.780 kb on - strandat 1251.780 kb on - strandat 1251.780 kb on - strandat 1251.780 kb on - strandat 1251.947 kb on + strand, within ABIE41_RS06065at 1252.104 kb on - strand, within ABIE41_RS06065at 1252.310 kb on + strand, within ABIE41_RS06065at 1252.311 kb on - strand, within ABIE41_RS06065at 1252.311 kb on - strand, within ABIE41_RS06065at 1252.311 kb on - strand, within ABIE41_RS06065at 1252.355 kb on + strand, within ABIE41_RS06065at 1252.355 kb on + strand, within ABIE41_RS06065at 1252.356 kb on - strand, within ABIE41_RS06065at 1252.356 kb on - strand, within ABIE41_RS06065at 1252.356 kb on - strand, within ABIE41_RS06065at 1252.356 kb on - strand, within ABIE41_RS06065

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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1,250,276 + ABIE41_RS06055 0.68 +0.9
1,250,277 - ABIE41_RS06055 0.68 -0.1
1,250,277 - ABIE41_RS06055 0.68 +1.6
1,250,277 - ABIE41_RS06055 0.68 +0.3
1,250,286 - ABIE41_RS06055 0.69 +0.5
1,251,206 + ABIE41_RS06060 0.12 -2.7
1,251,207 - ABIE41_RS06060 0.12 +0.2
1,251,240 + ABIE41_RS06060 0.19 +1.7
1,251,240 + ABIE41_RS06060 0.19 +0.6
1,251,583 - ABIE41_RS06060 0.89 +0.2
1,251,583 - ABIE41_RS06060 0.89 +0.4
1,251,601 - +0.3
1,251,601 - +0.1
1,251,747 + -0.2
1,251,747 + +1.1
1,251,748 - +1.2
1,251,748 - -0.8
1,251,779 + -0.3
1,251,779 + -0.3
1,251,779 + -0.5
1,251,779 + -1.1
1,251,779 + -0.8
1,251,779 + +0.9
1,251,780 - +1.7
1,251,780 - -1.1
1,251,780 - -0.7
1,251,780 - -1.8
1,251,780 - -1.0
1,251,780 - -1.0
1,251,947 + ABIE41_RS06065 0.10 -1.8
1,252,104 - ABIE41_RS06065 0.19 -0.1
1,252,310 + ABIE41_RS06065 0.30 -0.8
1,252,311 - ABIE41_RS06065 0.30 +0.4
1,252,311 - ABIE41_RS06065 0.30 -1.2
1,252,311 - ABIE41_RS06065 0.30 -0.5
1,252,355 + ABIE41_RS06065 0.33 +0.6
1,252,355 + ABIE41_RS06065 0.33 -0.0
1,252,356 - ABIE41_RS06065 0.33 -1.0
1,252,356 - ABIE41_RS06065 0.33 -0.8
1,252,356 - ABIE41_RS06065 0.33 +0.7
1,252,356 - ABIE41_RS06065 0.33 -0.6

Or see this region's nucleotide sequence