Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05335

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05330 and ABIE41_RS05335 are separated by 312 nucleotidesABIE41_RS05335 and ABIE41_RS05340 are separated by 142 nucleotidesABIE41_RS05340 and ABIE41_RS05345 are separated by 98 nucleotides ABIE41_RS05330: ABIE41_RS05330 - helicase-related protein, at 1,101,104 to 1,104,457 _RS05330 ABIE41_RS05335: ABIE41_RS05335 - alpha/beta hydrolase, at 1,104,770 to 1,105,657 _RS05335 ABIE41_RS05340: ABIE41_RS05340 - helix-turn-helix domain-containing protein, at 1,105,800 to 1,106,219 _RS05340 ABIE41_RS05345: ABIE41_RS05345 - cupin domain-containing protein, at 1,106,318 to 1,106,869 _RS05345 Position (kb) 1104 1105 1106Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1103.784 kb on + strand, within ABIE41_RS05330at 1103.784 kb on + strand, within ABIE41_RS05330at 1103.784 kb on + strand, within ABIE41_RS05330at 1103.785 kb on - strand, within ABIE41_RS05330at 1103.785 kb on - strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.805 kb on + strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.806 kb on - strand, within ABIE41_RS05330at 1103.901 kb on + strand, within ABIE41_RS05330at 1103.901 kb on + strand, within ABIE41_RS05330at 1103.901 kb on + strand, within ABIE41_RS05330at 1103.902 kb on - strand, within ABIE41_RS05330at 1103.902 kb on - strand, within ABIE41_RS05330at 1104.535 kb on + strandat 1104.540 kb on + strandat 1104.540 kb on + strandat 1104.541 kb on - strandat 1104.541 kb on - strandat 1104.541 kb on - strandat 1104.720 kb on + strandat 1104.720 kb on + strandat 1104.720 kb on + strandat 1104.720 kb on + strandat 1104.721 kb on - strandat 1104.721 kb on - strandat 1104.721 kb on - strandat 1104.721 kb on - strandat 1104.721 kb on - strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.724 kb on + strandat 1104.725 kb on - strandat 1104.725 kb on - strandat 1104.725 kb on - strandat 1104.725 kb on - strandat 1104.725 kb on - strandat 1105.131 kb on + strand, within ABIE41_RS05335at 1105.131 kb on + strand, within ABIE41_RS05335at 1105.131 kb on + strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.132 kb on - strand, within ABIE41_RS05335at 1105.201 kb on - strand, within ABIE41_RS05335at 1105.323 kb on + strand, within ABIE41_RS05335at 1105.323 kb on + strand, within ABIE41_RS05335at 1105.324 kb on - strand, within ABIE41_RS05335at 1105.324 kb on - strand, within ABIE41_RS05335at 1105.687 kb on + strandat 1105.688 kb on - strandat 1106.076 kb on + strand, within ABIE41_RS05340at 1106.076 kb on + strand, within ABIE41_RS05340at 1106.077 kb on - strand, within ABIE41_RS05340at 1106.077 kb on - strand, within ABIE41_RS05340at 1106.077 kb on - strand, within ABIE41_RS05340at 1106.158 kb on + strand, within ABIE41_RS05340at 1106.158 kb on + strand, within ABIE41_RS05340at 1106.159 kb on - strand, within ABIE41_RS05340at 1106.159 kb on - strand, within ABIE41_RS05340at 1106.161 kb on + strand, within ABIE41_RS05340at 1106.162 kb on - strand, within ABIE41_RS05340at 1106.246 kb on + strandat 1106.246 kb on + strandat 1106.246 kb on + strandat 1106.246 kb on + strandat 1106.246 kb on + strandat 1106.246 kb on + strandat 1106.247 kb on - strandat 1106.247 kb on - strandat 1106.247 kb on - strandat 1106.247 kb on - strandat 1106.247 kb on - strandat 1106.247 kb on - strandat 1106.264 kb on + strandat 1106.265 kb on - strandat 1106.265 kb on - strandat 1106.265 kb on - strandat 1106.265 kb on - strandat 1106.345 kb on + strandat 1106.345 kb on + strandat 1106.345 kb on + strandat 1106.346 kb on - strandat 1106.346 kb on - strandat 1106.406 kb on + strand, within ABIE41_RS05345at 1106.407 kb on - strand, within ABIE41_RS05345at 1106.407 kb on - strand, within ABIE41_RS05345at 1106.409 kb on + strand, within ABIE41_RS05345at 1106.410 kb on - strand, within ABIE41_RS05345at 1106.410 kb on - strand, within ABIE41_RS05345at 1106.538 kb on + strand, within ABIE41_RS05345at 1106.538 kb on + strand, within ABIE41_RS05345at 1106.539 kb on - strand, within ABIE41_RS05345at 1106.539 kb on - strand, within ABIE41_RS05345at 1106.595 kb on + strand, within ABIE41_RS05345at 1106.595 kb on + strand, within ABIE41_RS05345at 1106.595 kb on + strand, within ABIE41_RS05345at 1106.641 kb on - strand, within ABIE41_RS05345

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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1,103,784 + ABIE41_RS05330 0.80 +1.4
1,103,784 + ABIE41_RS05330 0.80 +0.6
1,103,784 + ABIE41_RS05330 0.80 +0.9
1,103,785 - ABIE41_RS05330 0.80 -0.6
1,103,785 - ABIE41_RS05330 0.80 +0.8
1,103,805 + ABIE41_RS05330 0.81 -0.7
1,103,805 + ABIE41_RS05330 0.81 -0.8
1,103,805 + ABIE41_RS05330 0.81 +1.7
1,103,805 + ABIE41_RS05330 0.81 +0.6
1,103,805 + ABIE41_RS05330 0.81 +0.7
1,103,805 + ABIE41_RS05330 0.81 -1.7
1,103,805 + ABIE41_RS05330 0.81 +1.2
1,103,805 + ABIE41_RS05330 0.81 +0.3
1,103,805 + ABIE41_RS05330 0.81 +0.8
1,103,805 + ABIE41_RS05330 0.81 +0.8
1,103,806 - ABIE41_RS05330 0.81 +0.7
1,103,806 - ABIE41_RS05330 0.81 -1.7
1,103,806 - ABIE41_RS05330 0.81 +1.4
1,103,806 - ABIE41_RS05330 0.81 +0.2
1,103,806 - ABIE41_RS05330 0.81 -0.4
1,103,901 + ABIE41_RS05330 0.83 -0.9
1,103,901 + ABIE41_RS05330 0.83 -2.0
1,103,901 + ABIE41_RS05330 0.83 -1.5
1,103,902 - ABIE41_RS05330 0.83 +0.9
1,103,902 - ABIE41_RS05330 0.83 +1.0
1,104,535 + -0.5
1,104,540 + +0.3
1,104,540 + +1.6
1,104,541 - +0.6
1,104,541 - +0.4
1,104,541 - -1.4
1,104,720 + +0.0
1,104,720 + -3.0
1,104,720 + +0.3
1,104,720 + -0.5
1,104,721 - +0.6
1,104,721 - +0.6
1,104,721 - +3.3
1,104,721 - +1.5
1,104,721 - -0.0
1,104,724 + -1.3
1,104,724 + -2.7
1,104,724 + +1.8
1,104,724 + +0.8
1,104,724 + +0.1
1,104,724 + -0.1
1,104,724 + -0.8
1,104,724 + +2.0
1,104,724 + +2.2
1,104,724 + +0.7
1,104,725 - +0.5
1,104,725 - +0.6
1,104,725 - +0.5
1,104,725 - +1.3
1,104,725 - +1.5
1,105,131 + ABIE41_RS05335 0.41 +0.3
1,105,131 + ABIE41_RS05335 0.41 +0.5
1,105,131 + ABIE41_RS05335 0.41 +0.1
1,105,132 - ABIE41_RS05335 0.41 +0.5
1,105,132 - ABIE41_RS05335 0.41 -0.2
1,105,132 - ABIE41_RS05335 0.41 +0.8
1,105,132 - ABIE41_RS05335 0.41 +0.4
1,105,132 - ABIE41_RS05335 0.41 +0.5
1,105,132 - ABIE41_RS05335 0.41 +1.7
1,105,201 - ABIE41_RS05335 0.49 +0.2
1,105,323 + ABIE41_RS05335 0.62 +0.1
1,105,323 + ABIE41_RS05335 0.62 +0.6
1,105,324 - ABIE41_RS05335 0.62 -0.7
1,105,324 - ABIE41_RS05335 0.62 +4.0
1,105,687 + -0.9
1,105,688 - -0.5
1,106,076 + ABIE41_RS05340 0.66 +0.5
1,106,076 + ABIE41_RS05340 0.66 +0.9
1,106,077 - ABIE41_RS05340 0.66 -0.2
1,106,077 - ABIE41_RS05340 0.66 +0.4
1,106,077 - ABIE41_RS05340 0.66 +0.1
1,106,158 + ABIE41_RS05340 0.85 +0.8
1,106,158 + ABIE41_RS05340 0.85 +0.1
1,106,159 - ABIE41_RS05340 0.85 +0.3
1,106,159 - ABIE41_RS05340 0.85 +1.5
1,106,161 + ABIE41_RS05340 0.86 +0.3
1,106,162 - ABIE41_RS05340 0.86 +0.7
1,106,246 + -0.3
1,106,246 + +0.2
1,106,246 + -0.3
1,106,246 + -0.3
1,106,246 + +0.5
1,106,246 + -0.0
1,106,247 - +0.4
1,106,247 - -2.2
1,106,247 - -1.6
1,106,247 - +0.9
1,106,247 - +0.5
1,106,247 - +0.7
1,106,264 + +1.4
1,106,265 - +0.8
1,106,265 - +0.4
1,106,265 - +0.3
1,106,265 - +0.3
1,106,345 + -0.7
1,106,345 + +0.9
1,106,345 + -0.1
1,106,346 - +0.2
1,106,346 - +0.8
1,106,406 + ABIE41_RS05345 0.16 -0.2
1,106,407 - ABIE41_RS05345 0.16 -0.1
1,106,407 - ABIE41_RS05345 0.16 +1.0
1,106,409 + ABIE41_RS05345 0.16 +0.9
1,106,410 - ABIE41_RS05345 0.17 +2.0
1,106,410 - ABIE41_RS05345 0.17 +1.5
1,106,538 + ABIE41_RS05345 0.40 +1.3
1,106,538 + ABIE41_RS05345 0.40 -2.4
1,106,539 - ABIE41_RS05345 0.40 +0.3
1,106,539 - ABIE41_RS05345 0.40 -0.4
1,106,595 + ABIE41_RS05345 0.50 +0.1
1,106,595 + ABIE41_RS05345 0.50 +1.2
1,106,595 + ABIE41_RS05345 0.50 +0.5
1,106,641 - ABIE41_RS05345 0.59 +0.3

Or see this region's nucleotide sequence