Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01955 and ABIE41_RS01960 overlap by 17 nucleotides ABIE41_RS01960 and ABIE41_RS01965 are separated by 2 nucleotides ABIE41_RS01965 and ABIE41_RS01970 are separated by 67 nucleotides ABIE41_RS01970 and ABIE41_RS01975 overlap by 14 nucleotides ABIE41_RS01975 and ABIE41_RS01980 are separated by 22 nucleotides
ABIE41_RS01955: ABIE41_RS01955 - hypothetical protein, at 393,465 to 394,226
_RS01955
ABIE41_RS01960: ABIE41_RS01960 - hypothetical protein, at 394,210 to 394,659
_RS01960
ABIE41_RS01965: ABIE41_RS01965 - hypothetical protein, at 394,662 to 395,129
_RS01965
ABIE41_RS01970: ABIE41_RS01970 - hypothetical protein, at 395,197 to 396,021
_RS01970
ABIE41_RS01975: ABIE41_RS01975 - hypothetical protein, at 396,008 to 396,430
_RS01975
ABIE41_RS01980: ABIE41_RS01980 - phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent), at 396,453 to 398,102
_RS01980
Position (kb) 395
396
397 Strain fitness (log2 ratio) -1
0
1 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.076 kb on + strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.077 kb on - strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.078 kb on + strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.079 kb on - strand, within ABIE41_RS01965 at 395.714 kb on - strand, within ABIE41_RS01970 at 395.734 kb on + strand, within ABIE41_RS01970 at 395.735 kb on - strand, within ABIE41_RS01970 at 395.735 kb on - strand, within ABIE41_RS01970 at 396.203 kb on + strand, within ABIE41_RS01975 at 396.203 kb on + strand, within ABIE41_RS01975 at 396.203 kb on + strand, within ABIE41_RS01975 at 396.204 kb on - strand, within ABIE41_RS01975 at 396.204 kb on - strand, within ABIE41_RS01975 at 396.204 kb on - strand, within ABIE41_RS01975 at 396.204 kb on - strand, within ABIE41_RS01975 at 396.295 kb on + strand, within ABIE41_RS01975 at 396.296 kb on - strand, within ABIE41_RS01975 at 396.296 kb on - strand, within ABIE41_RS01975 at 396.296 kb on - strand, within ABIE41_RS01975 at 396.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 395,076 + ABIE41_RS01965 0.88 +0.2 395,076 + ABIE41_RS01965 0.88 -0.0 395,076 + ABIE41_RS01965 0.88 -1.1 395,076 + ABIE41_RS01965 0.88 +0.2 395,076 + ABIE41_RS01965 0.88 -0.2 395,077 - ABIE41_RS01965 0.89 -1.5 395,077 - ABIE41_RS01965 0.89 -0.6 395,077 - ABIE41_RS01965 0.89 -0.4 395,077 - ABIE41_RS01965 0.89 -0.9 395,077 - ABIE41_RS01965 0.89 +0.0 395,078 + ABIE41_RS01965 0.89 +0.4 395,078 + ABIE41_RS01965 0.89 +0.3 395,078 + ABIE41_RS01965 0.89 -0.9 395,078 + ABIE41_RS01965 0.89 +0.1 395,078 + ABIE41_RS01965 0.89 -1.3 395,078 + ABIE41_RS01965 0.89 +0.3 395,078 + ABIE41_RS01965 0.89 +0.9 395,079 - ABIE41_RS01965 0.89 -0.6 395,079 - ABIE41_RS01965 0.89 -0.1 395,079 - ABIE41_RS01965 0.89 -0.0 395,079 - ABIE41_RS01965 0.89 -0.5 395,079 - ABIE41_RS01965 0.89 +0.8 395,079 - ABIE41_RS01965 0.89 +0.2 395,079 - ABIE41_RS01965 0.89 +0.2 395,079 - ABIE41_RS01965 0.89 +0.3 395,079 - ABIE41_RS01965 0.89 -0.4 395,079 - ABIE41_RS01965 0.89 +1.0 395,079 - ABIE41_RS01965 0.89 -1.3 395,714 - ABIE41_RS01970 0.63 -0.9 395,734 + ABIE41_RS01970 0.65 +0.0 395,735 - ABIE41_RS01970 0.65 -0.1 395,735 - ABIE41_RS01970 0.65 -0.7 396,203 + ABIE41_RS01975 0.46 -0.6 396,203 + ABIE41_RS01975 0.46 -0.7 396,203 + ABIE41_RS01975 0.46 +0.2 396,204 - ABIE41_RS01975 0.46 -1.4 396,204 - ABIE41_RS01975 0.46 +0.4 396,204 - ABIE41_RS01975 0.46 +1.5 396,204 - ABIE41_RS01975 0.46 -0.4 396,295 + ABIE41_RS01975 0.68 -1.4 396,296 - ABIE41_RS01975 0.68 -1.6 396,296 - ABIE41_RS01975 0.68 -0.3 396,296 - ABIE41_RS01975 0.68 -0.7 396,428 + -0.3
Or see this region's nucleotide sequence