Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00135

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00130 and ABIE41_RS00135 are separated by 158 nucleotidesABIE41_RS00135 and ABIE41_RS00140 are separated by 2 nucleotidesABIE41_RS00140 and ABIE41_RS00145 are separated by 114 nucleotides ABIE41_RS00130: ABIE41_RS00130 - LPS export ABC transporter ATP-binding protein, at 20,647 to 21,435 _RS00130 ABIE41_RS00135: ABIE41_RS00135 - LptA/OstA family protein, at 21,594 to 22,271 _RS00135 ABIE41_RS00140: ABIE41_RS00140 - LPS export ABC transporter periplasmic protein LptC, at 22,274 to 23,050 _RS00140 ABIE41_RS00145: ABIE41_RS00145 - ribonuclease D, at 23,165 to 23,779 _RS00145 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1at 23.170 kb on + strandat 23.171 kb on - strandat 23.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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23,170 + -1.3
23,171 - -0.9
23,171 - +0.1

Or see this region's nucleotide sequence