Strain Fitness in Pseudomonas sp. RS175 around PFR28_04703

Experiment: Quinic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Quinic Acid (C)
5,362,136	+				+0.0
5,362,136	+				-0.6
5,362,137	-				-0.9
5,362,137	-				-1.9
5,362,137	-				-1.4
5,362,184	+		PFR28_04702	0.15	+0.5
5,362,184	+		PFR28_04702	0.15	-0.9
5,362,185	-		PFR28_04702	0.15	-0.4
5,362,185	-		PFR28_04702	0.15	-0.3
5,362,233	+		PFR28_04702	0.23	-1.0
5,362,244	+		PFR28_04702	0.25	+0.9
5,362,244	+		PFR28_04702	0.25	-0.9
5,362,244	+		PFR28_04702	0.25	-0.9
5,362,245	-		PFR28_04702	0.25	+0.3
5,362,245	-		PFR28_04702	0.25	+0.9
5,362,251	+		PFR28_04702	0.26	+0.5
5,362,251	+		PFR28_04702	0.26	+0.8
5,362,267	+		PFR28_04702	0.28	-0.4
5,362,267	+		PFR28_04702	0.28	-0.3
5,362,268	-		PFR28_04702	0.29	-0.1
5,362,279	+		PFR28_04702	0.30	-1.2
5,362,279	+		PFR28_04702	0.30	+0.5
5,362,279	+		PFR28_04702	0.30	-0.2
5,362,280	-		PFR28_04702	0.31	-0.1
5,362,280	-		PFR28_04702	0.31	-2.4
5,362,280	-		PFR28_04702	0.31	-1.1
5,362,280	-		PFR28_04702	0.31	+1.3
5,362,287	+		PFR28_04702	0.32	-0.5
5,362,287	+		PFR28_04702	0.32	-0.6
5,362,287	+		PFR28_04702	0.32	+0.4
5,362,287	+		PFR28_04702	0.32	-2.2
5,362,287	+		PFR28_04702	0.32	+1.4
5,362,287	+		PFR28_04702	0.32	-3.8
5,362,287	+		PFR28_04702	0.32	+1.0
5,362,288	-		PFR28_04702	0.32	+0.0
5,362,288	-		PFR28_04702	0.32	+0.6
5,362,302	+		PFR28_04702	0.34	-0.6
5,362,390	+		PFR28_04702	0.49	-0.5
5,362,391	-		PFR28_04702	0.49	+0.3
5,362,391	-		PFR28_04702	0.49	-0.1
5,362,391	-		PFR28_04702	0.49	+0.1
5,362,391	-		PFR28_04702	0.49	+0.1
5,362,403	+		PFR28_04702	0.51	-2.4
5,362,403	+		PFR28_04702	0.51	+0.4
5,362,403	+		PFR28_04702	0.51	+1.4
5,362,403	+		PFR28_04702	0.51	+0.9
5,362,403	+		PFR28_04702	0.51	-0.3
5,362,403	+		PFR28_04702	0.51	-0.9
5,362,404	-		PFR28_04702	0.51	-0.3
5,362,404	-		PFR28_04702	0.51	-0.6
5,362,404	-		PFR28_04702	0.51	-1.7
5,362,404	-		PFR28_04702	0.51	+0.0
5,362,404	-		PFR28_04702	0.51	-0.1
5,362,404	-		PFR28_04702	0.51	-0.2
5,362,404	-		PFR28_04702	0.51	+0.3
5,362,404	-		PFR28_04702	0.51	-0.2
5,362,404	-		PFR28_04702	0.51	-0.7
5,362,404	-		PFR28_04702	0.51	+1.0
5,362,457	+		PFR28_04702	0.59	+1.9
5,362,457	+		PFR28_04702	0.59	-0.1
5,362,457	+		PFR28_04702	0.59	-1.3
5,362,457	+		PFR28_04702	0.59	-0.8
5,362,457	+		PFR28_04702	0.59	+0.8
5,362,458	-		PFR28_04702	0.60	+0.6
5,362,458	-		PFR28_04702	0.60	-0.5
5,362,458	-		PFR28_04702	0.60	-0.3
5,362,458	-		PFR28_04702	0.60	-1.8
5,362,524	+		PFR28_04702	0.70	+0.1
5,362,524	+		PFR28_04702	0.70	+1.2
5,362,525	-		PFR28_04702	0.71	+1.7
5,362,525	-		PFR28_04702	0.71	-1.9
5,362,541	+		PFR28_04702	0.73	-0.3
5,362,541	+		PFR28_04702	0.73	+2.4
5,362,541	+		PFR28_04702	0.73	-1.4
5,362,541	+		PFR28_04702	0.73	-1.3
5,362,541	+		PFR28_04702	0.73	-0.6
5,362,541	+		PFR28_04702	0.73	-0.1
5,362,542	-		PFR28_04702	0.73	-1.2
5,362,542	-		PFR28_04702	0.73	-0.6
5,362,542	-		PFR28_04702	0.73	-0.0
5,362,542	-		PFR28_04702	0.73	+0.6
5,362,542	-		PFR28_04702	0.73	-1.3
5,362,542	-		PFR28_04702	0.73	+0.6
5,362,542	-		PFR28_04702	0.73	+1.9
5,362,542	-		PFR28_04702	0.73	+0.5
5,362,542	-		PFR28_04702	0.73	-1.7
5,362,542	-		PFR28_04702	0.73	+1.0
5,362,587	+		PFR28_04702	0.81	-2.9
5,362,602	+		PFR28_04702	0.83	-0.1
5,362,603	-		PFR28_04702	0.83	-0.3
5,362,705	-				+1.0
5,362,732	+				-0.2
5,362,732	+				-1.8
5,362,732	+				-0.2
5,362,732	+				+0.4
5,362,733	-				+0.4
5,362,733	-				+2.3
5,362,733	-				-1.0
5,362,733	-				-1.0
5,362,738	+				+2.2
5,362,738	+				-0.9
5,362,738	+				+0.4
5,362,738	+				+0.6
5,362,738	+				-0.6
5,362,739	-				+0.0
5,362,739	-				+0.1
5,362,739	-				+0.2
5,362,739	-				-0.4
5,362,739	-				+1.1
5,362,739	-				-0.3
5,362,837	+				+1.5
5,362,838	-				+1.4
5,362,838	-				+0.3
5,362,851	+				-1.3
5,362,851	+				-0.8
5,362,851	+				-2.1
5,362,851	+				-1.1
5,362,852	-				-2.5
5,362,861	+				-0.4
5,362,914	-		PFR28_04703	0.17	-0.8
5,362,914	-		PFR28_04703	0.17	-0.4
5,362,924	+		PFR28_04703	0.20	-0.7
5,362,924	+		PFR28_04703	0.20	-0.4
5,362,925	-		PFR28_04703	0.20	+0.3
5,363,013	+		PFR28_04703	0.40	+0.9
5,363,014	-		PFR28_04703	0.40	+1.5
5,363,120	+		PFR28_04703	0.64	+0.4
5,363,121	-		PFR28_04703	0.64	+0.9
5,363,134	+		PFR28_04703	0.67	+1.0
5,363,134	+		PFR28_04703	0.67	+0.4
5,363,212	+		PFR28_04703	0.85	+2.4
5,363,212	+		PFR28_04703	0.85	+0.1
5,363,213	-		PFR28_04703	0.85	+0.4
5,363,213	-		PFR28_04703	0.85	+2.1
5,363,242	+				-0.8
5,363,276	+				-0.3
5,363,276	+				-1.9
5,363,276	+				-0.1
5,363,277	-				-1.1
5,363,277	-				+0.8
5,363,341	+				-0.0
5,363,341	+				+1.2
5,363,341	+				-0.6
5,363,341	+				-0.1
5,363,341	+				+0.5
5,363,341	+				-0.2
5,363,342	-				-1.1
5,363,342	-				-1.0
5,363,342	-				+0.3
5,363,342	-				+0.0
5,363,342	-				+0.2
5,363,342	-				-1.8
5,363,342	-				+0.1
5,363,342	-				+0.3
5,363,417	+				+0.8
5,363,417	+				+2.6
5,363,417	+				+0.4
5,363,417	+				+2.7
5,363,417	+				+0.1
5,363,424	+				-0.9
5,363,424	+				-0.1
5,363,424	+				+0.8
5,363,425	-				+0.1
5,363,455	-				-0.4
5,363,561	+		PFR28_04704	0.12	+1.1
5,363,561	+		PFR28_04704	0.12	-0.5
5,363,561	+		PFR28_04704	0.12	-0.2
5,363,561	+		PFR28_04704	0.12	+0.7
5,363,562	-		PFR28_04704	0.13	-0.9
5,363,562	-		PFR28_04704	0.13	-1.0
5,363,562	-		PFR28_04704	0.13	+0.1
5,363,562	-		PFR28_04704	0.13	+1.1
5,363,572	+		PFR28_04704	0.15	+0.6
5,363,572	+		PFR28_04704	0.15	-1.1
5,363,572	+		PFR28_04704	0.15	+0.7
5,363,572	+		PFR28_04704	0.15	+0.7
5,363,572	+		PFR28_04704	0.15	+0.1
5,363,572	+		PFR28_04704	0.15	-0.8
5,363,573	-		PFR28_04704	0.16	+1.4
5,363,573	-		PFR28_04704	0.16	+0.2
5,363,573	-		PFR28_04704	0.16	+0.0
5,363,573	-		PFR28_04704	0.16	+0.3
5,363,573	-		PFR28_04704	0.16	-0.8
5,363,584	+		PFR28_04704	0.19	-1.0
5,363,584	+		PFR28_04704	0.19	-0.6
5,363,584	+		PFR28_04704	0.19	+1.0
5,363,632	+		PFR28_04704	0.32	-0.0
5,363,695	-		PFR28_04704	0.49	-0.4
5,363,695	-		PFR28_04704	0.49	-0.0
5,363,753	+		PFR28_04704	0.65	+0.8
5,363,768	+		PFR28_04704	0.69	+0.6
5,363,768	+		PFR28_04704	0.69	-1.1
5,363,768	+		PFR28_04704	0.69	+1.1
5,363,769	-		PFR28_04704	0.69	+0.8
5,363,782	+		PFR28_04704	0.73	-2.2
5,363,782	+		PFR28_04704	0.73	+1.2
5,363,783	-		PFR28_04704	0.73	-0.7
5,363,791	-		PFR28_04704	0.75	+0.2
5,363,791	-		PFR28_04704	0.75	+1.0
5,363,791	-		PFR28_04704	0.75	-0.8
5,363,812	+		PFR28_04704	0.81	+0.8
5,363,813	-		PFR28_04704	0.81	-1.9
5,363,819	+		PFR28_04704	0.83	-0.3
5,363,819	+		PFR28_04704	0.83	-0.5
5,363,819	+		PFR28_04704	0.83	-1.6
5,363,819	+		PFR28_04704	0.83	-1.5
5,363,819	+		PFR28_04704	0.83	+1.1
5,363,819	+		PFR28_04704	0.83	-0.9
5,363,820	-		PFR28_04704	0.83	-0.0
5,363,820	-		PFR28_04704	0.83	+0.4
5,363,820	-		PFR28_04704	0.83	-2.4
5,363,820	-		PFR28_04704	0.83	+1.4
5,363,820	-		PFR28_04704	0.83	-0.9
5,363,820	-		PFR28_04704	0.83	-0.2
5,363,820	-		PFR28_04704	0.83	-1.6
5,363,870	+				-0.3
5,363,870	+				+0.7
5,363,870	+				+1.3
5,363,870	+				-3.0
5,363,870	+				-0.1
5,363,870	+				-0.4
5,363,871	-				-0.0
5,363,871	-				+0.4
5,363,871	-				-0.6
5,363,871	-				-0.3
5,363,871	-				+1.6
5,363,871	-				+0.1
5,363,871	-				-0.9
5,363,871	-				-0.2
5,363,871	-				+0.3
5,363,944	+				+0.6
5,363,944	+				+0.8
5,363,944	+				+0.2
5,363,945	-				-0.2
5,363,945	-				-0.3
5,363,945	-				+0.4
5,363,945	-				-1.6
5,363,958	+				-3.1
5,363,958	+				-0.3
5,363,958	+				+0.2
5,363,958	+				+0.4
5,363,958	+				+0.6
5,363,958	+				+0.3
5,363,958	+				+0.7
5,363,959	-				+0.3
5,363,959	-				+1.7
5,363,959	-				-0.8
5,363,959	-				+0.5
5,363,959	-				-1.0
5,363,959	-				+0.7
5,363,960	+				-0.2
5,363,961	-				-0.9
5,363,961	-				+0.2
5,363,961	-				+0.6
5,363,961	-				-0.0
5,363,961	-				+0.6
5,363,961	-				+0.2
5,364,091	-				+0.2
5,364,092	+				+1.1
5,364,092	+				-0.6
5,364,093	-				+1.5
5,364,093	-				-0.3
5,364,116	-		PFR28_04705	0.12	-0.5
5,364,116	-		PFR28_04705	0.12	-0.2
5,364,158	+		PFR28_04705	0.16	+0.0
5,364,158	+		PFR28_04705	0.16	+0.4
5,364,158	+		PFR28_04705	0.16	+0.5
5,364,158	+		PFR28_04705	0.16	+1.0
5,364,158	+		PFR28_04705	0.16	-0.3
5,364,158	+		PFR28_04705	0.16	+0.3
5,364,158	+		PFR28_04705	0.16	+0.1
5,364,158	+		PFR28_04705	0.16	+1.0
5,364,158	+		PFR28_04705	0.16	-1.0
5,364,158	+		PFR28_04705	0.16	-0.7
5,364,158	+		PFR28_04705	0.16	-0.4
5,364,158	+		PFR28_04705	0.16	-0.4
5,364,159	-		PFR28_04705	0.16	-2.4
5,364,159	-		PFR28_04705	0.16	+0.4
5,364,159	-		PFR28_04705	0.16	-0.9
5,364,159	-		PFR28_04705	0.16	+1.5
5,364,159	-		PFR28_04705	0.16	-0.2
5,364,159	-		PFR28_04705	0.16	+0.0
5,364,159	-		PFR28_04705	0.16	+0.6
5,364,159	-		PFR28_04705	0.16	-1.3
5,364,159	-		PFR28_04705	0.16	+0.2
5,364,159	-		PFR28_04705	0.16	-1.0
5,364,200	+		PFR28_04705	0.20	-0.2
5,364,200	+		PFR28_04705	0.20	-1.1
5,364,200	+		PFR28_04705	0.20	-0.2
5,364,218	+		PFR28_04705	0.22	+0.4
5,364,218	+		PFR28_04705	0.22	+0.9
5,364,218	+		PFR28_04705	0.22	-1.1
5,364,219	-		PFR28_04705	0.22	+0.2
5,364,219	-		PFR28_04705	0.22	+1.1
5,364,219	-		PFR28_04705	0.22	+1.4
5,364,219	-		PFR28_04705	0.22	-0.9
5,364,219	-		PFR28_04705	0.22	-0.5
5,364,219	-		PFR28_04705	0.22	+0.5
5,364,257	+		PFR28_04705	0.25	+0.6
5,364,257	+		PFR28_04705	0.25	+0.4
5,364,258	-		PFR28_04705	0.25	-0.5
5,364,258	-		PFR28_04705	0.25	+0.4