Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23845 and ABIE41_RS23850 are separated by 137 nucleotides ABIE41_RS23850 and ABIE41_RS23855 are separated by 162 nucleotides ABIE41_RS23855 and ABIE41_RS23860 are separated by 10 nucleotides ABIE41_RS23860 and ABIE41_RS23865 are separated by 12 nucleotides
ABIE41_RS23845: ABIE41_RS23845 - tetratricopeptide repeat protein, at 4,920,829 to 4,923,600
_RS23845
ABIE41_RS23850: ABIE41_RS23850 - LysE family translocator, at 4,923,738 to 4,924,370
_RS23850
ABIE41_RS23855: ABIE41_RS23855 - GNAT family acetyltransferase, at 4,924,533 to 4,925,039
_RS23855
ABIE41_RS23860: ABIE41_RS23860 - DinB family protein, at 4,925,050 to 4,925,556
_RS23860
ABIE41_RS23865: ABIE41_RS23865 - FAD-binding oxidoreductase, at 4,925,569 to 4,926,792
_RS23865
Position (kb) 4924
4925
4926 Strain fitness (log2 ratio) -1
0
1 at 4923.648 kb on + strand at 4923.648 kb on + strand at 4923.649 kb on - strand at 4923.649 kb on - strand at 4923.739 kb on + strand at 4923.979 kb on + strand, within ABIE41_RS23850 at 4923.979 kb on + strand, within ABIE41_RS23850 at 4923.980 kb on - strand, within ABIE41_RS23850 at 4923.980 kb on - strand, within ABIE41_RS23850 at 4923.980 kb on - strand, within ABIE41_RS23850 at 4924.123 kb on + strand, within ABIE41_RS23850 at 4924.124 kb on - strand, within ABIE41_RS23850 at 4924.124 kb on - strand, within ABIE41_RS23850 at 4924.124 kb on - strand, within ABIE41_RS23850 at 4924.154 kb on - strand, within ABIE41_RS23850 at 4924.210 kb on + strand, within ABIE41_RS23850 at 4924.210 kb on + strand, within ABIE41_RS23850 at 4924.210 kb on + strand, within ABIE41_RS23850 at 4924.211 kb on - strand, within ABIE41_RS23850 at 4924.211 kb on - strand, within ABIE41_RS23850 at 4924.211 kb on - strand, within ABIE41_RS23850 at 4924.211 kb on - strand, within ABIE41_RS23850 at 4924.291 kb on + strand, within ABIE41_RS23850 at 4924.292 kb on - strand, within ABIE41_RS23850 at 4924.292 kb on - strand, within ABIE41_RS23850 at 4924.292 kb on - strand, within ABIE41_RS23850 at 4924.292 kb on - strand, within ABIE41_RS23850 at 4924.292 kb on - strand, within ABIE41_RS23850 at 4924.292 kb on - strand, within ABIE41_RS23850 at 4924.292 kb on - strand, within ABIE41_RS23850 at 4924.292 kb on - strand, within ABIE41_RS23850 at 4924.557 kb on + strand at 4924.558 kb on - strand at 4924.558 kb on - strand at 4924.885 kb on - strand, within ABIE41_RS23855 at 4925.520 kb on - strand at 4925.540 kb on + strand at 4925.540 kb on + strand at 4925.541 kb on - strand at 4925.541 kb on - strand at 4925.541 kb on - strand at 4925.798 kb on + strand, within ABIE41_RS23865 at 4925.798 kb on + strand, within ABIE41_RS23865 at 4925.799 kb on - strand, within ABIE41_RS23865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 4,923,648 + +0.8 4,923,648 + -1.6 4,923,649 - -0.3 4,923,649 - -0.3 4,923,739 + -0.6 4,923,979 + ABIE41_RS23850 0.38 -0.6 4,923,979 + ABIE41_RS23850 0.38 +0.0 4,923,980 - ABIE41_RS23850 0.38 +0.6 4,923,980 - ABIE41_RS23850 0.38 -1.0 4,923,980 - ABIE41_RS23850 0.38 -0.3 4,924,123 + ABIE41_RS23850 0.61 +1.6 4,924,124 - ABIE41_RS23850 0.61 -1.0 4,924,124 - ABIE41_RS23850 0.61 +0.3 4,924,124 - ABIE41_RS23850 0.61 +0.2 4,924,154 - ABIE41_RS23850 0.66 -0.1 4,924,210 + ABIE41_RS23850 0.75 +1.2 4,924,210 + ABIE41_RS23850 0.75 +0.4 4,924,210 + ABIE41_RS23850 0.75 -0.7 4,924,211 - ABIE41_RS23850 0.75 +0.4 4,924,211 - ABIE41_RS23850 0.75 -0.3 4,924,211 - ABIE41_RS23850 0.75 -0.4 4,924,211 - ABIE41_RS23850 0.75 +0.0 4,924,291 + ABIE41_RS23850 0.87 -0.4 4,924,292 - ABIE41_RS23850 0.88 -0.3 4,924,292 - ABIE41_RS23850 0.88 +0.2 4,924,292 - ABIE41_RS23850 0.88 +0.3 4,924,292 - ABIE41_RS23850 0.88 +0.1 4,924,292 - ABIE41_RS23850 0.88 +0.9 4,924,292 - ABIE41_RS23850 0.88 +0.6 4,924,292 - ABIE41_RS23850 0.88 +0.5 4,924,292 - ABIE41_RS23850 0.88 +0.2 4,924,557 + +0.4 4,924,558 - +0.4 4,924,558 - +0.4 4,924,885 - ABIE41_RS23855 0.69 +0.2 4,925,520 - +0.5 4,925,540 + -0.2 4,925,540 + +1.3 4,925,541 - +1.1 4,925,541 - -0.1 4,925,541 - +0.1 4,925,798 + ABIE41_RS23865 0.19 -0.7 4,925,798 + ABIE41_RS23865 0.19 +0.1 4,925,799 - ABIE41_RS23865 0.19 +1.0
Or see this region's nucleotide sequence