Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19740

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS19735 and ABIE41_RS19740 are separated by 38 nucleotidesABIE41_RS19740 and ABIE41_RS19745 are separated by 165 nucleotidesABIE41_RS19745 and ABIE41_RS19750 overlap by 4 nucleotides ABIE41_RS19735: ABIE41_RS19735 - MFS transporter, at 4,052,807 to 4,054,012 _RS19735 ABIE41_RS19740: ABIE41_RS19740 - thiamine-phosphate kinase, at 4,054,051 to 4,055,037 _RS19740 ABIE41_RS19745: ABIE41_RS19745 - transcription antitermination factor NusB, at 4,055,203 to 4,055,700 _RS19745 ABIE41_RS19750: ABIE41_RS19750 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,055,697 to 4,056,207 _RS19750 Position (kb) 4054 4055 4056Strain fitness (log2 ratio) -1 0 1at 4053.321 kb on + strand, within ABIE41_RS19735at 4053.321 kb on + strand, within ABIE41_RS19735at 4053.322 kb on - strand, within ABIE41_RS19735at 4053.322 kb on - strand, within ABIE41_RS19735at 4053.633 kb on + strand, within ABIE41_RS19735at 4053.634 kb on - strand, within ABIE41_RS19735at 4053.762 kb on + strand, within ABIE41_RS19735at 4055.094 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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4,053,321 + ABIE41_RS19735 0.43 +1.1
4,053,321 + ABIE41_RS19735 0.43 +0.3
4,053,322 - ABIE41_RS19735 0.43 +0.1
4,053,322 - ABIE41_RS19735 0.43 +0.2
4,053,633 + ABIE41_RS19735 0.68 +0.5
4,053,634 - ABIE41_RS19735 0.69 -0.1
4,053,762 + ABIE41_RS19735 0.79 +1.1
4,055,094 + -0.3

Or see this region's nucleotide sequence