Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18075

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18065 and ABIE41_RS18070 are separated by 87 nucleotidesABIE41_RS18070 and ABIE41_RS18075 are separated by 190 nucleotidesABIE41_RS18075 and ABIE41_RS18080 are separated by 26 nucleotidesABIE41_RS18080 and ABIE41_RS18085 are separated by 15 nucleotidesABIE41_RS18085 and ABIE41_RS18090 are separated by 6 nucleotides ABIE41_RS18065: ABIE41_RS18065 - trigger factor, at 3,722,380 to 3,723,822 _RS18065 ABIE41_RS18070: ABIE41_RS18070 - tRNA-Leu, at 3,723,910 to 3,723,994 _RS18070 ABIE41_RS18075: ABIE41_RS18075 - multicopper oxidase family protein, at 3,724,185 to 3,725,621 _RS18075 ABIE41_RS18080: ABIE41_RS18080 - DoxX family protein, at 3,725,648 to 3,726,022 _RS18080 ABIE41_RS18085: ABIE41_RS18085 - gluconokinase, at 3,726,038 to 3,726,565 _RS18085 ABIE41_RS18090: ABIE41_RS18090 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 3,726,572 to 3,727,558 _RS18090 Position (kb) 3724 3725 3726Strain fitness (log2 ratio) -1 0 1 2 3at 3723.650 kb on + strand, within ABIE41_RS18065at 3723.650 kb on + strand, within ABIE41_RS18065at 3723.651 kb on - strand, within ABIE41_RS18065at 3723.848 kb on + strandat 3723.848 kb on + strandat 3723.848 kb on + strandat 3723.849 kb on - strandat 3724.020 kb on - strandat 3724.057 kb on - strandat 3724.057 kb on - strandat 3724.057 kb on - strandat 3724.172 kb on + strandat 3724.172 kb on + strandat 3725.369 kb on + strand, within ABIE41_RS18075at 3725.478 kb on + strandat 3725.479 kb on - strandat 3725.479 kb on - strandat 3725.672 kb on + strandat 3725.760 kb on + strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.761 kb on - strand, within ABIE41_RS18080at 3725.849 kb on + strand, within ABIE41_RS18080at 3725.849 kb on + strand, within ABIE41_RS18080at 3725.931 kb on - strand, within ABIE41_RS18080at 3725.931 kb on - strand, within ABIE41_RS18080at 3726.235 kb on - strand, within ABIE41_RS18085at 3726.235 kb on - strand, within ABIE41_RS18085at 3726.318 kb on + strand, within ABIE41_RS18085

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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3,723,650 + ABIE41_RS18065 0.88 -1.0
3,723,650 + ABIE41_RS18065 0.88 -0.3
3,723,651 - ABIE41_RS18065 0.88 +0.1
3,723,848 + -0.4
3,723,848 + -0.8
3,723,848 + -0.7
3,723,849 - -1.1
3,724,020 - +0.6
3,724,057 - -0.9
3,724,057 - -0.4
3,724,057 - +1.0
3,724,172 + -0.6
3,724,172 + -1.0
3,725,369 + ABIE41_RS18075 0.82 -0.6
3,725,478 + +1.3
3,725,479 - +0.8
3,725,479 - +0.5
3,725,672 + -0.5
3,725,760 + ABIE41_RS18080 0.30 +3.3
3,725,761 - ABIE41_RS18080 0.30 +0.5
3,725,761 - ABIE41_RS18080 0.30 +1.2
3,725,761 - ABIE41_RS18080 0.30 -0.5
3,725,849 + ABIE41_RS18080 0.54 +0.3
3,725,849 + ABIE41_RS18080 0.54 +1.2
3,725,931 - ABIE41_RS18080 0.75 +1.3
3,725,931 - ABIE41_RS18080 0.75 +1.1
3,726,235 - ABIE41_RS18085 0.37 +0.4
3,726,235 - ABIE41_RS18085 0.37 +0.2
3,726,318 + ABIE41_RS18085 0.53 -0.6

Or see this region's nucleotide sequence