Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18065 and ABIE41_RS18070 are separated by 87 nucleotides ABIE41_RS18070 and ABIE41_RS18075 are separated by 190 nucleotides ABIE41_RS18075 and ABIE41_RS18080 are separated by 26 nucleotides ABIE41_RS18080 and ABIE41_RS18085 are separated by 15 nucleotides ABIE41_RS18085 and ABIE41_RS18090 are separated by 6 nucleotides
ABIE41_RS18065: ABIE41_RS18065 - trigger factor, at 3,722,380 to 3,723,822
_RS18065
ABIE41_RS18070: ABIE41_RS18070 - tRNA-Leu, at 3,723,910 to 3,723,994
_RS18070
ABIE41_RS18075: ABIE41_RS18075 - multicopper oxidase family protein, at 3,724,185 to 3,725,621
_RS18075
ABIE41_RS18080: ABIE41_RS18080 - DoxX family protein, at 3,725,648 to 3,726,022
_RS18080
ABIE41_RS18085: ABIE41_RS18085 - gluconokinase, at 3,726,038 to 3,726,565
_RS18085
ABIE41_RS18090: ABIE41_RS18090 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 3,726,572 to 3,727,558
_RS18090
Position (kb)
3724
3725
3726 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3723.650 kb on + strand, within ABIE41_RS18065 at 3723.650 kb on + strand, within ABIE41_RS18065 at 3723.651 kb on - strand, within ABIE41_RS18065 at 3723.848 kb on + strand at 3723.848 kb on + strand at 3723.848 kb on + strand at 3723.849 kb on - strand at 3724.020 kb on - strand at 3724.057 kb on - strand at 3724.057 kb on - strand at 3724.057 kb on - strand at 3724.172 kb on + strand at 3724.172 kb on + strand at 3725.369 kb on + strand, within ABIE41_RS18075 at 3725.478 kb on + strand at 3725.479 kb on - strand at 3725.479 kb on - strand at 3725.672 kb on + strand at 3725.760 kb on + strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.849 kb on + strand, within ABIE41_RS18080 at 3725.849 kb on + strand, within ABIE41_RS18080 at 3725.931 kb on - strand, within ABIE41_RS18080 at 3725.931 kb on - strand, within ABIE41_RS18080 at 3726.235 kb on - strand, within ABIE41_RS18085 at 3726.235 kb on - strand, within ABIE41_RS18085 at 3726.318 kb on + strand, within ABIE41_RS18085
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM remove 3,723,650 + ABIE41_RS18065 0.88 -1.0 3,723,650 + ABIE41_RS18065 0.88 -0.3 3,723,651 - ABIE41_RS18065 0.88 +0.1 3,723,848 + -0.4 3,723,848 + -0.8 3,723,848 + -0.7 3,723,849 - -1.1 3,724,020 - +0.6 3,724,057 - -0.9 3,724,057 - -0.4 3,724,057 - +1.0 3,724,172 + -0.6 3,724,172 + -1.0 3,725,369 + ABIE41_RS18075 0.82 -0.6 3,725,478 + +1.3 3,725,479 - +0.8 3,725,479 - +0.5 3,725,672 + -0.5 3,725,760 + ABIE41_RS18080 0.30 +3.3 3,725,761 - ABIE41_RS18080 0.30 +0.5 3,725,761 - ABIE41_RS18080 0.30 +1.2 3,725,761 - ABIE41_RS18080 0.30 -0.5 3,725,849 + ABIE41_RS18080 0.54 +0.3 3,725,849 + ABIE41_RS18080 0.54 +1.2 3,725,931 - ABIE41_RS18080 0.75 +1.3 3,725,931 - ABIE41_RS18080 0.75 +1.1 3,726,235 - ABIE41_RS18085 0.37 +0.4 3,726,235 - ABIE41_RS18085 0.37 +0.2 3,726,318 + ABIE41_RS18085 0.53 -0.6
Or see this region's nucleotide sequence