Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14925

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14915 and ABIE41_RS14920 are separated by 171 nucleotidesABIE41_RS14920 and ABIE41_RS14925 are separated by 145 nucleotidesABIE41_RS14925 and ABIE41_RS14930 are separated by 118 nucleotidesABIE41_RS14930 and ABIE41_RS14935 are separated by 103 nucleotides ABIE41_RS14915: ABIE41_RS14915 - VOC family protein, at 3,046,183 to 3,047,157 _RS14915 ABIE41_RS14920: ABIE41_RS14920 - hypothetical protein, at 3,047,329 to 3,047,721 _RS14920 ABIE41_RS14925: ABIE41_RS14925 - aminotransferase, at 3,047,867 to 3,049,051 _RS14925 ABIE41_RS14930: ABIE41_RS14930 - Sir2 family NAD-dependent protein deacetylase, at 3,049,170 to 3,049,925 _RS14930 ABIE41_RS14935: ABIE41_RS14935 - DUF3429 domain-containing protein, at 3,050,029 to 3,050,484 _RS14935 Position (kb) 3047 3048 3049 3050Strain fitness (log2 ratio) -1 0 1 2at 3046.955 kb on + strand, within ABIE41_RS14915at 3046.955 kb on + strand, within ABIE41_RS14915at 3047.189 kb on + strandat 3047.243 kb on + strandat 3047.244 kb on - strandat 3047.760 kb on - strandat 3047.875 kb on + strandat 3047.970 kb on + strandat 3048.061 kb on - strand, within ABIE41_RS14925at 3048.333 kb on + strand, within ABIE41_RS14925at 3048.334 kb on - strand, within ABIE41_RS14925at 3048.367 kb on + strand, within ABIE41_RS14925at 3048.492 kb on + strand, within ABIE41_RS14925at 3048.660 kb on + strand, within ABIE41_RS14925at 3048.660 kb on + strand, within ABIE41_RS14925at 3048.804 kb on + strand, within ABIE41_RS14925at 3048.804 kb on + strand, within ABIE41_RS14925at 3048.804 kb on + strand, within ABIE41_RS14925at 3048.843 kb on + strand, within ABIE41_RS14925at 3048.960 kb on + strandat 3048.961 kb on - strandat 3049.153 kb on + strandat 3049.401 kb on + strand, within ABIE41_RS14930at 3049.401 kb on + strand, within ABIE41_RS14930at 3049.402 kb on - strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.557 kb on + strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.558 kb on - strand, within ABIE41_RS14930at 3049.780 kb on - strand, within ABIE41_RS14930at 3049.987 kb on + strandat 3049.987 kb on + strandat 3049.987 kb on + strandat 3049.987 kb on + strandat 3049.988 kb on - strandat 3049.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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3,046,955 + ABIE41_RS14915 0.79 +0.2
3,046,955 + ABIE41_RS14915 0.79 +0.9
3,047,189 + +0.5
3,047,243 + +0.4
3,047,244 - -0.4
3,047,760 - -1.0
3,047,875 + +0.8
3,047,970 + +0.9
3,048,061 - ABIE41_RS14925 0.16 +0.1
3,048,333 + ABIE41_RS14925 0.39 +0.6
3,048,334 - ABIE41_RS14925 0.39 +1.4
3,048,367 + ABIE41_RS14925 0.42 +0.5
3,048,492 + ABIE41_RS14925 0.53 +0.2
3,048,660 + ABIE41_RS14925 0.67 +0.4
3,048,660 + ABIE41_RS14925 0.67 +1.3
3,048,804 + ABIE41_RS14925 0.79 +0.2
3,048,804 + ABIE41_RS14925 0.79 +0.0
3,048,804 + ABIE41_RS14925 0.79 +1.0
3,048,843 + ABIE41_RS14925 0.82 +0.8
3,048,960 + -0.1
3,048,961 - -0.6
3,049,153 + +0.7
3,049,401 + ABIE41_RS14930 0.31 +0.5
3,049,401 + ABIE41_RS14930 0.31 -0.5
3,049,402 - ABIE41_RS14930 0.31 -0.3
3,049,557 + ABIE41_RS14930 0.51 -0.8
3,049,557 + ABIE41_RS14930 0.51 -0.0
3,049,557 + ABIE41_RS14930 0.51 +0.8
3,049,557 + ABIE41_RS14930 0.51 +1.6
3,049,557 + ABIE41_RS14930 0.51 +0.9
3,049,558 - ABIE41_RS14930 0.51 +0.4
3,049,558 - ABIE41_RS14930 0.51 +0.7
3,049,558 - ABIE41_RS14930 0.51 +0.0
3,049,558 - ABIE41_RS14930 0.51 +0.8
3,049,558 - ABIE41_RS14930 0.51 +0.8
3,049,558 - ABIE41_RS14930 0.51 -0.0
3,049,558 - ABIE41_RS14930 0.51 +0.1
3,049,558 - ABIE41_RS14930 0.51 +0.3
3,049,558 - ABIE41_RS14930 0.51 +0.7
3,049,780 - ABIE41_RS14930 0.81 +0.5
3,049,987 + +0.8
3,049,987 + +0.9
3,049,987 + +0.3
3,049,987 + -0.7
3,049,988 - -0.0
3,049,988 - +2.3

Or see this region's nucleotide sequence