Strain Fitness in Pseudomonas sp. RS175 around PFR28_03624

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
4,187,437	+		PFR28_03623	0.29	-1.1
4,187,437	+		PFR28_03623	0.29	-1.4
4,187,438	-		PFR28_03623	0.30	-0.2
4,187,438	-		PFR28_03623	0.30	+0.3
4,187,599	+		PFR28_03623	0.46	+1.1
4,187,599	+		PFR28_03623	0.46	+0.2
4,187,874	-		PFR28_03623	0.73	+0.8
4,187,874	-		PFR28_03623	0.73	-1.3
4,187,874	-		PFR28_03623	0.73	-0.4
4,188,053	-				-1.6
4,188,121	+				+0.4
4,188,121	+				-1.0
4,188,122	-				+1.1
4,188,210	+				+1.0
4,188,210	+				-1.0
4,188,210	+				+1.7
4,188,210	+				-2.9
4,188,210	+				-0.2
4,188,211	-				-2.8
4,188,211	-				+3.1
4,188,211	-				+0.3
4,188,211	-				-1.3
4,188,211	-				+2.4
4,188,211	-				+1.1
4,188,211	-				-1.8
4,188,242	+				-0.5
4,188,242	+				+1.3
4,188,242	+				-0.9
4,188,242	+				+0.9
4,188,242	+				+0.2
4,188,242	+				-0.3
4,188,243	-				-1.5
4,188,243	-				-1.5
4,188,243	-				+0.9
4,188,243	-				+0.5
4,188,243	-				+1.5
4,188,252	+				-1.5
4,188,252	+				+0.9
4,188,252	+				+0.3
4,188,252	+				-1.0
4,188,252	+				+0.2
4,188,252	+				-2.8
4,188,252	+				+0.6
4,188,252	+				+1.8
4,188,252	+				-0.1
4,188,252	+				+0.3
4,188,252	+				+1.4
4,188,252	+				+1.1
4,188,252	+				+0.3
4,188,252	+				-0.3
4,188,252	+				-1.0
4,188,253	-				-0.2
4,188,253	-				-0.9
4,188,253	-				-2.0
4,188,253	-				-4.4
4,188,253	-				-1.6
4,188,253	-				-0.1
4,188,253	-				+1.5
4,188,253	-				-2.6
4,188,253	-				-2.5
4,188,275	+				-1.3
4,188,276	-				-0.6
4,188,323	+				-2.0
4,188,323	+				-0.1
4,188,323	+				-0.4
4,188,323	+				-2.4
4,188,323	+				+0.0
4,188,323	+				+0.7
4,188,323	+				-3.2
4,188,323	+				-3.9
4,188,323	+				-0.3
4,188,323	+				-0.5
4,188,324	-				+1.2
4,188,324	-				-3.3
4,188,324	-				+0.7
4,188,324	-				+2.8
4,188,324	-				-3.4
4,188,324	-				+0.2
4,188,324	-				-1.0
4,188,324	-				+0.4
4,188,359	+				+1.0
4,188,359	+				-0.8
4,188,359	+				-1.9
4,188,359	+				-0.8
4,188,359	+				-0.1
4,188,359	+				+2.3
4,188,360	-				+0.4
4,188,360	-				-2.5
4,188,360	-				+0.8
4,188,360	-				+0.4
4,188,360	-				+0.1
4,188,360	-				+0.5
4,188,360	-				+0.5
4,188,368	+				+0.1
4,188,369	-				-0.3
4,188,835	+		PFR28_03624	0.74	-0.8
4,188,835	+		PFR28_03624	0.74	-3.7
4,188,835	+		PFR28_03624	0.74	+1.2
4,188,835	+		PFR28_03624	0.74	-1.0
4,188,835	+		PFR28_03624	0.74	-2.8
4,188,835	+		PFR28_03624	0.74	-0.9
4,188,836	-		PFR28_03624	0.74	+0.8
4,188,836	-		PFR28_03624	0.74	+0.2
4,188,836	-		PFR28_03624	0.74	+1.4
4,188,836	-		PFR28_03624	0.74	-1.9
4,188,956	+				+0.6
4,188,956	+				+0.1
4,188,956	+				+1.5
4,188,956	+				-2.5
4,188,956	+				-0.8
4,188,957	-				-2.2
4,188,957	-				-0.2
4,188,957	-				+0.7
4,188,957	-				+0.8
4,188,957	-				+0.2
4,188,957	-				-0.4
4,188,957	-				-1.0
4,188,990	-				+0.4
4,189,099	+				-2.5
4,189,099	+				-2.6
4,189,099	+				-0.4
4,189,100	-				-0.3
4,189,100	-				+2.0
4,189,100	-				-0.0
4,189,100	-				-0.2
4,189,100	-				+1.9
4,189,117	+				+0.4
4,189,118	-				-1.7
4,189,261	+		PFR28_03625	0.20	-1.5
4,189,284	+		PFR28_03625	0.23	-0.9
4,189,284	+		PFR28_03625	0.23	-3.4
4,189,284	+		PFR28_03625	0.23	-0.3
4,189,285	-		PFR28_03625	0.23	-1.9
4,189,342	+		PFR28_03625	0.30	+1.2
4,189,342	+		PFR28_03625	0.30	+1.2
4,189,342	+		PFR28_03625	0.30	-0.3
4,189,343	-		PFR28_03625	0.30	-1.0
4,189,343	-		PFR28_03625	0.30	-0.6
4,189,343	-		PFR28_03625	0.30	-1.5
4,189,343	-		PFR28_03625	0.30	-1.9
4,189,343	-		PFR28_03625	0.30	-0.5
4,189,343	-		PFR28_03625	0.30	+0.1
4,189,430	-		PFR28_03625	0.41	-0.1
4,189,543	+		PFR28_03625	0.55	+2.3
4,189,543	+		PFR28_03625	0.55	-1.1
4,189,543	+		PFR28_03625	0.55	-0.9
4,189,543	+		PFR28_03625	0.55	+0.3
4,189,543	+		PFR28_03625	0.55	-1.9
4,189,543	+		PFR28_03625	0.55	-0.6
4,189,544	-		PFR28_03625	0.55	+1.2
4,189,544	-		PFR28_03625	0.55	-2.7
4,189,751	-		PFR28_03625	0.80	+0.0
4,189,751	-		PFR28_03625	0.80	+0.6
4,189,762	+		PFR28_03625	0.81	+0.0
4,189,762	+		PFR28_03625	0.81	-0.7
4,189,762	+		PFR28_03625	0.81	-0.5
4,189,762	+		PFR28_03625	0.81	-0.9
4,189,762	+		PFR28_03625	0.81	-0.0
4,189,763	-		PFR28_03625	0.81	-1.0
4,189,763	-		PFR28_03625	0.81	-2.9
4,189,763	-		PFR28_03625	0.81	+0.3
4,189,763	-		PFR28_03625	0.81	-2.3
4,189,804	+		PFR28_03625	0.87	-2.5
4,189,804	+		PFR28_03625	0.87	-2.7
4,189,804	+		PFR28_03625	0.87	+0.2
4,189,804	+		PFR28_03625	0.87	-1.8
4,189,804	+		PFR28_03625	0.87	-4.0
4,189,804	+		PFR28_03625	0.87	-1.7
4,189,804	+		PFR28_03625	0.87	-0.3
4,189,804	+		PFR28_03625	0.87	-0.3
4,189,805	-		PFR28_03625	0.87	-0.2
4,189,805	-		PFR28_03625	0.87	+0.7
4,189,805	-		PFR28_03625	0.87	-1.0
4,189,805	-		PFR28_03625	0.87	+0.4
4,189,805	-		PFR28_03625	0.87	-2.6
4,189,805	-		PFR28_03625	0.87	-1.8
4,189,805	-		PFR28_03625	0.87	+0.3
4,189,805	-		PFR28_03625	0.87	-2.5
4,189,805	-		PFR28_03625	0.87	-0.4
4,189,818	+		PFR28_03625	0.88	-1.8
4,189,818	+		PFR28_03625	0.88	-0.8
4,189,819	-		PFR28_03625	0.88	+1.5
4,189,893	+				-0.5
4,189,893	+				-1.6
4,189,893	+				-0.5
4,189,893	+				-1.8
4,189,893	+				-0.2
4,189,893	+				-1.3
4,189,893	+				-1.0
4,189,893	+				+1.3
4,189,893	+				+0.2
4,189,893	+				-1.0
4,189,893	+				-0.6
4,189,893	+				+1.1
4,189,893	+				+1.4
4,189,893	+				+0.8
4,189,893	+				-0.8
4,189,893	+				-3.0
4,189,894	-				+2.0
4,189,894	-				-0.6
4,189,894	-				+1.5
4,189,894	-				-1.6
4,189,894	-				-0.0
4,189,894	-				-3.2
4,189,894	-				-1.5
4,189,894	-				+0.1
4,189,914	-				-2.3
4,189,941	-				-1.9
4,189,945	+				-3.6
4,189,945	+				+0.2
4,189,972	+				-3.5
4,189,972	+				-3.2
4,189,972	+				-0.1
4,189,973	-				+0.2
4,189,973	-				+0.1
4,189,973	-				-1.5
4,189,973	-				+1.2
4,189,973	-				+1.1
4,189,987	+				+1.7
4,189,987	+				-1.9
4,189,987	+				-1.5
4,189,987	+				-0.5
4,189,988	-				-0.3