Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19735

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS19725 and ABIE41_RS19730 are separated by 4 nucleotidesABIE41_RS19730 and ABIE41_RS19735 are separated by 36 nucleotidesABIE41_RS19735 and ABIE41_RS19740 are separated by 38 nucleotides ABIE41_RS19725: ABIE41_RS19725 - polysaccharide deacetylase family protein, at 4,051,072 to 4,051,965 _RS19725 ABIE41_RS19730: ABIE41_RS19730 - (S)-ureidoglycine aminohydrolase, at 4,051,970 to 4,052,770 _RS19730 ABIE41_RS19735: ABIE41_RS19735 - MFS transporter, at 4,052,807 to 4,054,012 _RS19735 ABIE41_RS19740: ABIE41_RS19740 - thiamine-phosphate kinase, at 4,054,051 to 4,055,037 _RS19740 Position (kb) 4052 4053 4054 4055Strain fitness (log2 ratio) -3 -2 -1 0 1at 4052.001 kb on + strandat 4052.001 kb on + strandat 4052.001 kb on + strandat 4052.002 kb on - strandat 4052.010 kb on + strandat 4052.010 kb on + strandat 4052.010 kb on + strandat 4052.010 kb on + strandat 4052.011 kb on - strandat 4052.055 kb on + strand, within ABIE41_RS19730at 4052.116 kb on - strand, within ABIE41_RS19730at 4052.116 kb on - strand, within ABIE41_RS19730at 4052.116 kb on - strand, within ABIE41_RS19730at 4052.139 kb on + strand, within ABIE41_RS19730at 4052.139 kb on + strand, within ABIE41_RS19730at 4052.352 kb on + strand, within ABIE41_RS19730at 4052.480 kb on + strand, within ABIE41_RS19730at 4052.505 kb on + strand, within ABIE41_RS19730at 4052.506 kb on - strand, within ABIE41_RS19730at 4052.578 kb on - strand, within ABIE41_RS19730at 4052.578 kb on - strand, within ABIE41_RS19730at 4052.578 kb on - strand, within ABIE41_RS19730at 4052.578 kb on - strand, within ABIE41_RS19730at 4052.578 kb on - strand, within ABIE41_RS19730at 4052.578 kb on - strand, within ABIE41_RS19730at 4052.578 kb on - strand, within ABIE41_RS19730at 4052.578 kb on - strand, within ABIE41_RS19730at 4052.686 kb on - strand, within ABIE41_RS19730at 4052.782 kb on + strandat 4052.782 kb on + strandat 4052.782 kb on + strandat 4052.783 kb on - strandat 4053.010 kb on - strand, within ABIE41_RS19735at 4053.321 kb on + strand, within ABIE41_RS19735at 4053.321 kb on + strand, within ABIE41_RS19735at 4053.322 kb on - strand, within ABIE41_RS19735at 4053.322 kb on - strand, within ABIE41_RS19735at 4053.633 kb on + strand, within ABIE41_RS19735at 4053.634 kb on - strand, within ABIE41_RS19735at 4053.762 kb on + strand, within ABIE41_RS19735

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
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4,052,001 + -2.9
4,052,001 + -0.1
4,052,001 + +0.4
4,052,002 - -0.4
4,052,010 + -0.2
4,052,010 + +0.6
4,052,010 + +0.7
4,052,010 + +1.3
4,052,011 - +0.2
4,052,055 + ABIE41_RS19730 0.11 +0.5
4,052,116 - ABIE41_RS19730 0.18 +0.1
4,052,116 - ABIE41_RS19730 0.18 -0.2
4,052,116 - ABIE41_RS19730 0.18 +1.5
4,052,139 + ABIE41_RS19730 0.21 +0.3
4,052,139 + ABIE41_RS19730 0.21 -0.1
4,052,352 + ABIE41_RS19730 0.48 +0.4
4,052,480 + ABIE41_RS19730 0.64 -1.7
4,052,505 + ABIE41_RS19730 0.67 -0.1
4,052,506 - ABIE41_RS19730 0.67 -1.1
4,052,578 - ABIE41_RS19730 0.76 +0.7
4,052,578 - ABIE41_RS19730 0.76 -0.2
4,052,578 - ABIE41_RS19730 0.76 +0.1
4,052,578 - ABIE41_RS19730 0.76 +0.6
4,052,578 - ABIE41_RS19730 0.76 -0.1
4,052,578 - ABIE41_RS19730 0.76 +0.1
4,052,578 - ABIE41_RS19730 0.76 +0.1
4,052,578 - ABIE41_RS19730 0.76 +1.2
4,052,686 - ABIE41_RS19730 0.89 +0.8
4,052,782 + +0.4
4,052,782 + -0.1
4,052,782 + +0.2
4,052,783 - +0.2
4,053,010 - ABIE41_RS19735 0.17 +0.6
4,053,321 + ABIE41_RS19735 0.43 -0.7
4,053,321 + ABIE41_RS19735 0.43 +0.6
4,053,322 - ABIE41_RS19735 0.43 +0.3
4,053,322 - ABIE41_RS19735 0.43 +0.1
4,053,633 + ABIE41_RS19735 0.68 +0.8
4,053,634 - ABIE41_RS19735 0.69 -1.3
4,053,762 + ABIE41_RS19735 0.79 +1.1

Or see this region's nucleotide sequence