Strain Fitness in Pseudomonas sp. RS175 around PFR28_04743

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
5,400,859	-		PFR28_04742	0.52	-3.4
5,400,877	+		PFR28_04742	0.53	-0.7
5,400,878	-		PFR28_04742	0.53	-1.2
5,400,878	-		PFR28_04742	0.53	+2.0
5,400,878	-		PFR28_04742	0.53	+0.4
5,401,038	+		PFR28_04742	0.64	+0.9
5,401,038	+		PFR28_04742	0.64	+0.3
5,401,038	+		PFR28_04742	0.64	+0.3
5,401,039	-		PFR28_04742	0.64	-0.9
5,401,039	-		PFR28_04742	0.64	-0.9
5,401,055	+		PFR28_04742	0.65	-1.8
5,401,055	+		PFR28_04742	0.65	-2.4
5,401,055	+		PFR28_04742	0.65	+0.3
5,401,055	+		PFR28_04742	0.65	-3.0
5,401,055	+		PFR28_04742	0.65	-0.4
5,401,056	-		PFR28_04742	0.65	+0.4
5,401,056	-		PFR28_04742	0.65	+0.1
5,401,056	-		PFR28_04742	0.65	-1.0
5,401,056	-		PFR28_04742	0.65	-0.7
5,401,056	-		PFR28_04742	0.65	+0.1
5,401,056	-		PFR28_04742	0.65	+0.3
5,401,112	+		PFR28_04742	0.68	+0.1
5,401,112	+		PFR28_04742	0.68	+0.7
5,401,112	+		PFR28_04742	0.68	+0.4
5,401,112	+		PFR28_04742	0.68	+1.0
5,401,112	+		PFR28_04742	0.68	-0.2
5,401,113	-		PFR28_04742	0.68	-0.9
5,401,113	-		PFR28_04742	0.68	+0.3
5,401,113	-		PFR28_04742	0.68	-0.4
5,401,113	-		PFR28_04742	0.68	+1.7
5,401,113	-		PFR28_04742	0.68	-2.4
5,401,113	-		PFR28_04742	0.68	+1.8
5,401,113	-		PFR28_04742	0.68	+0.6
5,401,113	-		PFR28_04742	0.68	+1.4
5,401,136	+		PFR28_04742	0.70	+2.2
5,401,137	-		PFR28_04742	0.70	+1.0
5,401,489	+				+0.9
5,401,490	-				-2.6
5,401,490	-				+0.3
5,401,490	-				+0.8
5,401,490	-				+0.2
5,401,625	-				+0.6
5,401,625	-				-0.3
5,401,655	+				-2.0
5,401,655	+				-0.2
5,401,655	+				-0.5
5,401,655	+				-0.4
5,401,655	+				+0.6
5,401,656	-				+1.7
5,401,656	-				+1.4
5,401,688	+				-0.3
5,401,688	+				-0.9
5,401,689	-				-1.4
5,401,690	+				-0.2
5,401,690	+				+1.4
5,401,690	+				-0.6
5,401,690	+				+0.1
5,401,690	+				-0.3
5,401,690	+				-2.5
5,401,690	+				-0.7
5,401,690	+				-2.6
5,401,690	+				-0.5
5,401,691	-				+0.2
5,401,691	-				+0.9
5,401,691	-				-0.5
5,401,722	+				+0.8
5,401,722	+				-0.8
5,401,723	-				-1.9
5,401,723	-				-1.2
5,401,723	-				+0.6
5,401,734	+				-0.4
5,401,957	+		PFR28_04743	0.40	-2.4
5,401,957	+		PFR28_04743	0.40	+0.1
5,401,957	+		PFR28_04743	0.40	-0.7
5,401,958	-		PFR28_04743	0.40	-0.7
5,401,958	-		PFR28_04743	0.40	-1.7
5,402,021	-		PFR28_04743	0.51	-0.8
5,402,109	+		PFR28_04743	0.67	-2.7
5,402,109	+		PFR28_04743	0.67	-1.7
5,402,110	-		PFR28_04743	0.67	-1.0
5,402,110	-		PFR28_04743	0.67	-0.9
5,402,110	-		PFR28_04743	0.67	-3.2
5,402,110	-		PFR28_04743	0.67	-0.6
5,402,119	+		PFR28_04743	0.68	-2.3
5,402,119	+		PFR28_04743	0.68	-1.0
5,402,119	+		PFR28_04743	0.68	+0.4
5,402,119	+		PFR28_04743	0.68	-0.2
5,402,119	+		PFR28_04743	0.68	-0.3
5,402,119	+		PFR28_04743	0.68	+0.7
5,402,119	+		PFR28_04743	0.68	-1.1
5,402,119	+		PFR28_04743	0.68	-2.9
5,402,119	+		PFR28_04743	0.68	-0.6
5,402,120	-		PFR28_04743	0.69	-0.5
5,402,120	-		PFR28_04743	0.69	-2.5
5,402,120	-		PFR28_04743	0.69	-1.6
5,402,120	-		PFR28_04743	0.69	+0.8
5,402,120	-		PFR28_04743	0.69	-0.1
5,402,120	-		PFR28_04743	0.69	+0.3
5,402,120	-		PFR28_04743	0.69	+1.2
5,402,120	-		PFR28_04743	0.69	+0.6
5,402,120	-		PFR28_04743	0.69	-0.8
5,402,120	-		PFR28_04743	0.69	+0.3
5,402,120	-		PFR28_04743	0.69	+0.3
5,402,120	-		PFR28_04743	0.69	-0.2
5,402,121	+		PFR28_04743	0.69	-1.8
5,402,122	-		PFR28_04743	0.69	-0.9
5,402,161	+		PFR28_04743	0.76	+0.8
5,402,162	-		PFR28_04743	0.76	-1.9
5,402,162	-		PFR28_04743	0.76	+0.6
5,402,176	+		PFR28_04743	0.79	-1.1
5,402,176	+		PFR28_04743	0.79	-1.8
5,402,177	-		PFR28_04743	0.79	+0.1
5,402,177	-		PFR28_04743	0.79	+1.6
5,402,177	-		PFR28_04743	0.79	-1.0
5,402,489	+		PFR28_04744	0.35	-1.8
5,402,490	-		PFR28_04744	0.36	-0.9
5,402,521	+		PFR28_04744	0.53	-2.7
5,402,521	+		PFR28_04744	0.53	-0.4
5,402,521	+		PFR28_04744	0.53	+1.6
5,402,521	+		PFR28_04744	0.53	+0.5
5,402,521	+		PFR28_04744	0.53	+1.2
5,402,522	-		PFR28_04744	0.54	-0.6
5,402,522	-		PFR28_04744	0.54	-4.1
5,402,628	+				-3.8
5,402,629	-				-0.5
5,402,636	+				-1.1
5,402,636	+				-0.6
5,402,637	-				+0.7
5,402,637	-				-0.7
5,402,637	-				+0.3
5,402,637	-				-0.1
5,402,656	+				+0.3
5,402,656	+				+0.1
5,402,656	+				+1.7
5,402,656	+				-2.7
5,402,657	-				-0.4
5,402,657	-				+0.6
5,402,686	-				-0.1
5,402,686	-				-2.5
5,402,686	-				+0.2
5,402,686	-				+0.7
5,402,730	+				+0.5
5,402,730	+				-0.3
5,402,730	+				-0.7
5,402,730	+				-0.0
5,402,730	+				-2.8
5,402,731	-				+0.7
5,402,731	-				-2.1
5,402,731	-				+3.9
5,402,988	+		PFR28_04745	0.27	+0.6
5,403,008	-		PFR28_04745	0.28	+1.9
5,403,008	-		PFR28_04745	0.28	+0.6
5,403,144	+		PFR28_04745	0.39	+3.9
5,403,144	+		PFR28_04745	0.39	+0.6
5,403,144	+		PFR28_04745	0.39	-1.7
5,403,145	-		PFR28_04745	0.39	+0.6
5,403,145	-		PFR28_04745	0.39	-0.1
5,403,210	+		PFR28_04745	0.44	-0.4
5,403,210	+		PFR28_04745	0.44	-0.6
5,403,211	-		PFR28_04745	0.44	-0.7
5,403,211	-		PFR28_04745	0.44	-0.4