Strain Fitness in Pseudomonas sp. RS175 around PFR28_02946

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
3,452,600	-		PFR28_02944	0.48	-0.8
3,452,600	-		PFR28_02944	0.48	+1.5
3,452,815	+				+0.8
3,452,924	+				+0.3
3,452,925	-				+1.1
3,452,964	+				+0.8
3,452,964	+				-0.6
3,452,964	+				-1.2
3,452,965	-				+0.4
3,452,965	-				-2.2
3,452,965	-				+1.7
3,452,965	-				-1.1
3,452,975	-				+0.7
3,452,975	-				-0.6
3,452,975	-				+0.4
3,452,992	+				+1.1
3,453,055	+				+0.1
3,453,055	+				-3.0
3,453,137	+				-0.1
3,453,285	-		PFR28_02945	0.80	-2.7
3,453,308	+				+0.3
3,453,308	+				+0.4
3,453,309	-				-0.2
3,453,309	-				-2.4
3,453,375	-				-0.9
3,453,398	-				-0.8
3,453,483	+				+0.9
3,453,660	+				-0.3
3,453,800	-		PFR28_02946	0.15	+1.5
3,453,914	+		PFR28_02946	0.20	-3.0
3,453,914	+		PFR28_02946	0.20	+0.0
3,453,914	+		PFR28_02946	0.20	-0.9
3,453,914	+		PFR28_02946	0.20	+0.6
3,453,921	+		PFR28_02946	0.20	-0.0
3,453,921	+		PFR28_02946	0.20	+3.3
3,453,921	+		PFR28_02946	0.20	+0.1
3,453,921	+		PFR28_02946	0.20	-0.3
3,454,466	+		PFR28_02946	0.45	+0.4
3,454,466	+		PFR28_02946	0.45	+0.2
3,454,466	+		PFR28_02946	0.45	-0.2
3,454,466	+		PFR28_02946	0.45	+0.4
3,454,466	+		PFR28_02946	0.45	-0.4
3,454,466	+		PFR28_02946	0.45	-1.3
3,454,466	+		PFR28_02946	0.45	-0.9
3,454,467	-		PFR28_02946	0.45	+1.5
3,454,467	-		PFR28_02946	0.45	-0.2
3,454,467	-		PFR28_02946	0.45	-1.4
3,454,467	-		PFR28_02946	0.45	+0.0
3,454,804	-		PFR28_02946	0.61	-1.1
3,454,804	-		PFR28_02946	0.61	+0.4
3,455,008	-		PFR28_02946	0.70	+3.2
3,455,008	-		PFR28_02946	0.70	+0.1
3,455,078	+		PFR28_02946	0.73	-0.5
3,455,078	+		PFR28_02946	0.73	-0.1
3,455,079	-		PFR28_02946	0.73	-2.2
3,455,079	-		PFR28_02946	0.73	+0.1
3,455,275	-		PFR28_02946	0.82	+0.5
3,455,297	+		PFR28_02946	0.83	-1.4
3,455,297	+		PFR28_02946	0.83	-0.5
3,455,297	+		PFR28_02946	0.83	+0.1
3,455,297	+		PFR28_02946	0.83	-2.4
3,455,297	+		PFR28_02946	0.83	-1.9
3,455,298	-		PFR28_02946	0.83	-1.3
3,455,298	-		PFR28_02946	0.83	-2.4
3,455,350	-		PFR28_02946	0.86	-0.6
3,455,351	+		PFR28_02946	0.86	-2.5
3,455,351	+		PFR28_02946	0.86	+0.7
3,455,351	+		PFR28_02946	0.86	-2.2
3,455,351	+		PFR28_02946	0.86	+1.5
3,455,351	+		PFR28_02946	0.86	-2.5
3,455,351	+		PFR28_02946	0.86	-1.5
3,455,352	-		PFR28_02946	0.86	+0.3
3,455,352	-		PFR28_02946	0.86	+1.5
3,455,352	-		PFR28_02946	0.86	-2.5
3,455,352	-		PFR28_02946	0.86	-2.5
3,455,352	-		PFR28_02946	0.86	-1.1
3,455,352	-		PFR28_02946	0.86	-1.3
3,455,416	+		PFR28_02946	0.89	-2.7
3,455,416	+		PFR28_02946	0.89	+1.0
3,455,416	+		PFR28_02946	0.89	+0.4
3,455,416	+		PFR28_02946	0.89	+0.6
3,455,416	+		PFR28_02946	0.89	-0.9
3,455,417	-		PFR28_02946	0.89	+0.7
3,455,417	-		PFR28_02946	0.89	+2.9
3,455,417	-		PFR28_02946	0.89	+0.9
3,455,417	-		PFR28_02946	0.89	-3.0
3,455,483	+				-3.5
3,455,483	+				+0.8
3,455,483	+				-1.1
3,455,483	+				-2.2
3,455,484	-				-0.2
3,455,689	+				-0.7
3,455,689	+				+0.6
3,455,689	+				+0.5
3,455,732	+				-1.9
3,455,733	-				-0.4
3,455,774	+				-0.4
3,455,774	+				-1.0
3,455,774	+				-0.3
3,455,774	+				-2.4
3,455,774	+				+1.0
3,455,774	+				+0.2
3,455,774	+				-0.9
3,455,774	+				-2.0
3,455,774	+				-0.0
3,455,775	-				+0.9
3,455,775	-				+2.1
3,455,775	-				+0.0
3,455,775	-				+0.2
3,455,775	-				+0.4
3,455,775	-				+0.1
3,455,775	-				-0.6
3,455,775	-				-0.3
3,455,775	-				-2.5
3,455,775	-				+0.1
3,455,775	-				+0.3
3,455,815	+				+0.4
3,455,815	+				+1.0
3,455,815	+				+0.7
3,455,822	-				-1.2
3,455,822	-				-1.6
3,455,835	-				+0.0
3,455,840	+				+1.6
3,455,840	+				-0.6
3,455,840	+				-1.2
3,455,840	+				+0.6
3,455,840	+				-0.2
3,455,840	+				+0.1
3,455,840	+				+0.6
3,455,840	+				-0.1
3,455,840	+				+1.0
3,455,840	+				-0.3
3,455,840	+				-1.4
3,455,840	+				+2.1
3,455,840	+				+1.6
3,455,841	-				+1.0
3,455,841	-				-1.7
3,455,841	-				+1.0
3,455,841	-				+1.8
3,455,841	-				+1.9
3,455,843	+				+0.0
3,455,979	+				+2.2
3,455,979	+				-0.9
3,455,980	-				+1.1
3,456,091	+		PFR28_02947	0.20	-0.2
3,456,091	+		PFR28_02947	0.20	+0.7
3,456,091	+		PFR28_02947	0.20	-0.9
3,456,091	+		PFR28_02947	0.20	+0.4
3,456,091	+		PFR28_02947	0.20	+0.1
3,456,091	+		PFR28_02947	0.20	-0.6
3,456,091	+		PFR28_02947	0.20	+0.0
3,456,091	+		PFR28_02947	0.20	-0.6
3,456,092	-		PFR28_02947	0.20	-1.9
3,456,092	-		PFR28_02947	0.20	+0.6
3,456,092	-		PFR28_02947	0.20	-0.6
3,456,092	-		PFR28_02947	0.20	+0.8
3,456,095	-		PFR28_02947	0.20	+1.3
3,456,157	+		PFR28_02947	0.26	+0.9
3,456,249	+		PFR28_02947	0.35	-2.4
3,456,249	+		PFR28_02947	0.35	+0.4
3,456,249	+		PFR28_02947	0.35	-1.4
3,456,249	+		PFR28_02947	0.35	-0.3
3,456,250	-		PFR28_02947	0.35	+1.3
3,456,250	-		PFR28_02947	0.35	-0.9
3,456,250	-		PFR28_02947	0.35	-2.8
3,456,250	-		PFR28_02947	0.35	+0.3
3,456,271	-		PFR28_02947	0.37	-0.3
3,456,297	+		PFR28_02947	0.40	+0.1
3,456,297	+		PFR28_02947	0.40	+0.5
3,456,297	+		PFR28_02947	0.40	+1.6
3,456,298	-		PFR28_02947	0.40	+0.1
3,456,298	-		PFR28_02947	0.40	+1.1
3,456,298	-		PFR28_02947	0.40	-0.3
3,456,298	-		PFR28_02947	0.40	-1.9
3,456,298	-		PFR28_02947	0.40	+2.8
3,456,298	-		PFR28_02947	0.40	-2.0
3,456,298	-		PFR28_02947	0.40	+0.4
3,456,315	+		PFR28_02947	0.41	+1.6
3,456,315	+		PFR28_02947	0.41	-0.9
3,456,315	+		PFR28_02947	0.41	+0.1
3,456,422	-		PFR28_02947	0.52	+0.5
3,456,422	-		PFR28_02947	0.52	+1.3
3,456,422	-		PFR28_02947	0.52	+0.6
3,456,469	-		PFR28_02947	0.56	-1.4
3,456,507	+		PFR28_02947	0.60	-1.1
3,456,507	+		PFR28_02947	0.60	-0.4
3,456,579	+		PFR28_02947	0.67	-1.3
3,456,579	+		PFR28_02947	0.67	-0.5
3,456,580	-		PFR28_02947	0.67	-0.8
3,456,580	-		PFR28_02947	0.67	-1.4
3,456,580	-		PFR28_02947	0.67	-0.1
3,456,580	-		PFR28_02947	0.67	-0.7
3,456,580	-		PFR28_02947	0.67	+1.9
3,456,580	-		PFR28_02947	0.67	+1.5
3,456,580	-		PFR28_02947	0.67	+0.2
3,456,600	+		PFR28_02947	0.69	-0.6
3,456,600	+		PFR28_02947	0.69	+0.4
3,456,600	+		PFR28_02947	0.69	+0.8
3,456,600	+		PFR28_02947	0.69	+1.3
3,456,600	+		PFR28_02947	0.69	+0.5
3,456,600	+		PFR28_02947	0.69	+2.2
3,456,600	+		PFR28_02947	0.69	-2.5
3,456,600	+		PFR28_02947	0.69	+0.9
3,456,600	+		PFR28_02947	0.69	-0.7
3,456,600	+		PFR28_02947	0.69	-0.9
3,456,600	+		PFR28_02947	0.69	-2.3
3,456,600	+		PFR28_02947	0.69	+1.8
3,456,600	+		PFR28_02947	0.69	+0.1
3,456,601	-		PFR28_02947	0.69	+0.6
3,456,601	-		PFR28_02947	0.69	+0.5
3,456,601	-		PFR28_02947	0.69	-0.3
3,456,601	-		PFR28_02947	0.69	+0.2
3,456,601	-		PFR28_02947	0.69	-0.5
3,456,601	-		PFR28_02947	0.69	+0.5
3,456,601	-		PFR28_02947	0.69	-1.4
3,456,601	-		PFR28_02947	0.69	-0.6
3,456,601	-		PFR28_02947	0.69	+0.1
3,456,601	-		PFR28_02947	0.69	-0.9
3,456,601	-		PFR28_02947	0.69	+2.7
3,456,601	-		PFR28_02947	0.69	+1.0
3,456,601	-		PFR28_02947	0.69	+0.4
3,456,601	-		PFR28_02947	0.69	-0.0
3,456,601	-		PFR28_02947	0.69	+0.2
3,456,601	-		PFR28_02947	0.69	-1.4
3,456,601	-		PFR28_02947	0.69	-0.3
3,456,601	-		PFR28_02947	0.69	+0.7
3,456,601	-		PFR28_02947	0.69	-0.9
3,456,629	+		PFR28_02947	0.72	-0.9
3,456,630	-		PFR28_02947	0.72	-0.5
3,456,630	-		PFR28_02947	0.72	+0.3
3,456,663	+		PFR28_02947	0.75	+1.3
3,456,663	+		PFR28_02947	0.75	+0.7
3,456,663	+		PFR28_02947	0.75	+0.7
3,456,663	+		PFR28_02947	0.75	-0.9
3,456,664	-		PFR28_02947	0.75	-1.9
3,456,664	-		PFR28_02947	0.75	+0.2
3,456,664	-		PFR28_02947	0.75	-0.5
3,456,664	-		PFR28_02947	0.75	-2.4
3,456,664	-		PFR28_02947	0.75	+0.1