Strain Fitness in Pseudomonas sp. RS175 around PFR28_02124

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
2,440,971	-				+0.9
2,440,971	-				-1.5
2,440,983	+				-1.5
2,440,983	+				-0.6
2,440,983	+				-1.4
2,440,983	+				-2.3
2,440,983	+				-2.5
2,440,983	+				+1.0
2,440,983	+				-0.2
2,440,983	+				-1.4
2,440,983	+				+0.8
2,440,983	+				+2.4
2,440,983	+				+1.7
2,440,983	+				+0.9
2,440,983	+				+1.4
2,440,983	+				+0.1
2,440,983	+				+0.4
2,440,983	+				-1.7
2,440,983	+				-2.4
2,440,983	+				-2.3
2,440,983	+				-1.1
2,440,984	-				-0.9
2,440,984	-				+0.3
2,440,984	-				-0.2
2,440,984	-				-0.2
2,440,984	-				+1.1
2,440,984	-				+0.6
2,440,984	-				+0.4
2,440,984	-				-0.6
2,440,984	-				-1.4
2,440,984	-				-0.8
2,440,984	-				+2.1
2,440,984	-				-0.4
2,440,984	-				+0.3
2,440,984	-				+1.9
2,440,984	-				-1.4
2,440,984	-				-1.2
2,440,984	-				-0.0
2,440,984	-				-0.2
2,440,984	-				-1.4
2,440,984	-				+0.7
2,440,984	-				+0.4
2,440,984	-				+0.4
2,440,984	-				+0.9
2,440,984	-				-2.6
2,440,984	-				-1.4
2,440,984	-				+1.7
2,440,984	-				+0.9
2,440,984	-				+0.3
2,440,984	-				+2.4
2,440,984	-				+0.9
2,440,985	+				+1.7
2,440,985	+				+1.4
2,440,985	+				+0.8
2,440,985	+				+0.4
2,440,985	+				-2.4
2,440,985	+				-0.2
2,440,985	+				+3.2
2,440,985	+				+0.2
2,440,985	+				-2.0
2,440,985	+				+0.4
2,440,985	+				-1.2
2,440,985	+				-1.2
2,440,985	+				-2.2
2,440,985	+				+0.4
2,440,985	+				+0.1
2,440,986	-				-1.7
2,440,986	-				-1.3
2,440,986	-				+0.9
2,440,986	-				-0.2
2,440,986	-				+1.4
2,440,986	-				+0.2
2,440,986	-				+0.0
2,440,986	-				-0.6
2,440,986	-				-1.0
2,440,986	-				-0.7
2,440,986	-				-0.1
2,440,986	-				-0.4
2,440,986	-				+0.8
2,440,986	-				+0.0
2,440,987	+				-0.5
2,440,987	+				-3.2
2,440,987	+				-1.2
2,440,987	+				-2.9
2,440,988	-				+1.3
2,440,988	-				-0.5
2,440,988	-				+1.0
2,440,988	-				-1.4
2,441,014	-				-1.6
2,441,025	+				-1.2
2,441,025	+				-1.6
2,441,026	-				-3.6
2,441,026	-				-3.6
2,441,049	+				+2.0
2,441,049	+				-2.3
2,441,050	-				-3.2
2,441,055	+				-1.5
2,441,055	+				+1.7
2,441,055	+				+0.4
2,441,056	-				-2.4
2,441,056	-				+3.9
2,441,056	-				-0.6
2,441,056	-				+0.2
2,441,057	+				+0.2
2,441,057	+				+0.2
2,441,058	-				-2.8
2,441,149	+				+1.1
2,441,149	+				-0.3
2,441,182	+				-0.2
2,441,297	+				+0.0
2,441,298	-				+0.3
2,441,298	-				+0.3
2,441,298	-				+0.0
2,441,298	-				+1.8
2,441,640	+				+0.1
2,441,640	+				+1.7
2,441,691	-				-0.2
2,441,697	+				+0.3
2,441,738	+				+0.5
2,441,918	-				+0.2
2,441,918	-				-0.3
2,441,918	-				-0.4
2,441,922	+				-2.9
2,441,923	-				+0.6
2,441,923	-				-0.6
2,442,449	+		PFR28_02124	0.42	-2.2
2,442,449	+		PFR28_02124	0.42	+0.4
2,442,450	-		PFR28_02124	0.43	+0.8
2,442,450	-		PFR28_02124	0.43	+0.3
2,442,450	-		PFR28_02124	0.43	-1.2
2,442,450	-		PFR28_02124	0.43	-1.0
2,442,457	-		PFR28_02124	0.43	+0.2
2,442,488	+		PFR28_02124	0.45	-0.0
2,442,536	+		PFR28_02124	0.48	-1.4
2,442,536	+		PFR28_02124	0.48	+1.1
2,442,536	+		PFR28_02124	0.48	-1.9
2,442,537	-		PFR28_02124	0.48	-0.2
2,442,606	-		PFR28_02124	0.53	+0.1
2,442,626	+		PFR28_02124	0.55	+0.3
2,442,626	+		PFR28_02124	0.55	+0.7
2,442,626	+		PFR28_02124	0.55	+0.1
2,442,626	+		PFR28_02124	0.55	+2.8
2,442,627	-		PFR28_02124	0.55	+0.3
2,442,627	-		PFR28_02124	0.55	-0.1
2,442,627	-		PFR28_02124	0.55	-0.6
2,442,627	-		PFR28_02124	0.55	-0.2
2,442,627	-		PFR28_02124	0.55	-2.0
2,442,627	-		PFR28_02124	0.55	-0.7
2,442,641	+		PFR28_02124	0.56	+1.3
2,442,641	+		PFR28_02124	0.56	+0.1
2,442,642	-		PFR28_02124	0.56	+1.5
2,442,642	-		PFR28_02124	0.56	-1.2
2,442,668	+		PFR28_02124	0.57	-2.3
2,442,668	+		PFR28_02124	0.57	-0.2
2,442,668	+		PFR28_02124	0.57	-3.1
2,442,669	-		PFR28_02124	0.58	+1.0
2,442,669	-		PFR28_02124	0.58	-2.7
2,442,669	-		PFR28_02124	0.58	+1.0
2,442,669	-		PFR28_02124	0.58	+0.0
2,442,669	-		PFR28_02124	0.58	+0.2
2,442,731	+		PFR28_02124	0.62	+0.1
2,442,731	+		PFR28_02124	0.62	+0.2
2,442,731	+		PFR28_02124	0.62	+0.2
2,442,731	+		PFR28_02124	0.62	+0.8
2,442,731	+		PFR28_02124	0.62	-2.0
2,442,732	-		PFR28_02124	0.62	-0.6
2,442,732	-		PFR28_02124	0.62	-1.9
2,442,732	-		PFR28_02124	0.62	+1.9
2,442,732	-		PFR28_02124	0.62	+1.0
2,442,732	-		PFR28_02124	0.62	-0.1
2,442,732	-		PFR28_02124	0.62	-2.9
2,442,732	-		PFR28_02124	0.62	+0.6
2,442,732	-		PFR28_02124	0.62	-0.9
2,442,764	+		PFR28_02124	0.64	-0.1
2,442,764	+		PFR28_02124	0.64	-1.0
2,442,764	+		PFR28_02124	0.64	-0.9
2,442,764	+		PFR28_02124	0.64	+1.0
2,442,764	+		PFR28_02124	0.64	+0.0
2,442,764	+		PFR28_02124	0.64	-1.0
2,442,764	+		PFR28_02124	0.64	+0.4
2,442,764	+		PFR28_02124	0.64	+0.3
2,442,765	-		PFR28_02124	0.64	-0.7
2,442,765	-		PFR28_02124	0.64	+1.3
2,442,765	-		PFR28_02124	0.64	-1.0
2,442,765	-		PFR28_02124	0.64	-0.4
2,442,765	-		PFR28_02124	0.64	-0.1
2,442,824	+		PFR28_02124	0.68	+0.3
2,442,824	+		PFR28_02124	0.68	+0.9
2,442,860	+		PFR28_02124	0.71	+0.9
2,442,860	+		PFR28_02124	0.71	+0.3
2,442,860	+		PFR28_02124	0.71	-3.3
2,442,860	+		PFR28_02124	0.71	+0.3
2,442,860	+		PFR28_02124	0.71	+0.7
2,442,860	+		PFR28_02124	0.71	-0.6
2,442,860	+		PFR28_02124	0.71	+0.2
2,442,861	-		PFR28_02124	0.71	+1.0
2,442,861	-		PFR28_02124	0.71	+1.2
2,442,861	-		PFR28_02124	0.71	-2.3
2,443,041	+		PFR28_02124	0.83	+1.4
2,443,041	+		PFR28_02124	0.83	+0.7
2,443,041	+		PFR28_02124	0.83	-0.2
2,443,042	-		PFR28_02124	0.83	+0.8
2,443,042	-		PFR28_02124	0.83	-0.4
2,443,043	+		PFR28_02124	0.83	-2.1
2,443,043	+		PFR28_02124	0.83	-1.0
2,443,043	+		PFR28_02124	0.83	-0.7
2,443,043	+		PFR28_02124	0.83	+0.4
2,443,043	+		PFR28_02124	0.83	+0.2
2,443,043	+		PFR28_02124	0.83	+0.1
2,443,044	-		PFR28_02124	0.83	+1.6
2,443,044	-		PFR28_02124	0.83	-1.1
2,443,044	-		PFR28_02124	0.83	+3.0
2,443,044	-		PFR28_02124	0.83	+0.1
2,443,044	-		PFR28_02124	0.83	-2.5
2,443,044	-		PFR28_02124	0.83	+1.5
2,443,044	-		PFR28_02124	0.83	+0.0
2,443,044	-		PFR28_02124	0.83	-2.0
2,443,044	-		PFR28_02124	0.83	+1.0
2,443,044	-		PFR28_02124	0.83	-0.5
2,443,044	-		PFR28_02124	0.83	+2.3
2,443,130	+		PFR28_02124	0.89	-0.3
2,443,130	+		PFR28_02124	0.89	-0.8
2,443,131	-		PFR28_02124	0.89	+0.7
2,443,131	-		PFR28_02124	0.89	+0.5
2,443,172	+				-1.6
2,443,172	+				-0.3
2,443,172	+				+2.0
2,443,172	+				-0.9
2,443,172	+				-1.4
2,443,173	-				-0.1
2,443,173	-				-0.3
2,443,173	-				+0.0
2,443,173	-				+1.0
2,443,173	-				-0.4
2,443,173	-				+1.2
2,443,173	-				-0.9
2,443,188	+				-1.4
2,443,209	+				+0.4
2,443,287	+				-0.5
2,443,288	-				-2.5
2,443,288	-				-0.0
2,443,288	-				+1.7
2,443,411	-				-0.4
2,443,452	+				+1.6
2,443,453	-				+0.8
2,443,484	-				+2.2
2,443,533	-				+0.4
2,443,539	+				-0.2
2,443,589	-				-1.9
2,443,609	+				-0.6
2,443,620	+				+1.1
2,443,620	+				+0.1
2,443,621	-				+0.8
2,443,621	-				+1.9
2,443,621	-				+0.3
2,443,681	+				-2.1
2,443,681	+				+1.6
2,443,681	+				+1.4
2,443,681	+				+0.2
2,443,681	+				+1.0
2,443,681	+				-0.5
2,443,681	+				+1.4
2,443,681	+				-0.3
2,443,681	+				+2.0
2,443,681	+				-0.6
2,443,681	+				-1.2
2,443,681	+				-0.7
2,443,681	+				-0.5
2,443,681	+				-0.3
2,443,681	+				-2.7
2,443,681	+				-3.4
2,443,682	-				-1.5
2,443,682	-				+0.4
2,443,682	-				+0.1
2,443,682	-				-2.5
2,443,682	-				-0.3
2,443,682	-				-0.7
2,443,682	-				+2.4
2,443,682	-				-1.0
2,443,682	-				+0.3
2,443,682	-				+0.9
2,443,682	-				-1.0
2,443,682	-				-0.3
2,443,682	-				+0.4
2,443,682	-				+1.1
2,443,682	-				+2.1
2,443,682	-				+0.6
2,443,682	-				-1.7
2,443,682	-				-0.2
2,443,682	-				+2.6
2,443,799	-		PFR28_02125	0.12	-1.1
2,443,865	+		PFR28_02125	0.19	-3.0
2,443,865	+		PFR28_02125	0.19	-1.2
2,443,866	-		PFR28_02125	0.19	+1.6
2,443,866	-		PFR28_02125	0.19	+0.1
2,443,942	-		PFR28_02125	0.28	+0.8
2,444,039	+		PFR28_02125	0.38	-0.7
2,444,040	-		PFR28_02125	0.38	-1.2
2,444,040	-		PFR28_02125	0.38	+0.4
2,444,215	-		PFR28_02125	0.57	-0.2