Strain Fitness in Pseudomonas sp. RS175 around PFR28_01099

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
1,210,324	+				+2.5
1,210,324	+				-0.6
1,210,324	+				-1.3
1,210,324	+				+0.7
1,210,325	-				+2.0
1,210,337	+				-2.2
1,210,337	+				-0.7
1,210,337	+				-0.1
1,210,337	+				+0.9
1,210,338	-				-0.3
1,210,338	-				+0.3
1,210,338	-				-0.7
1,210,338	-				+0.9
1,210,338	-				-3.7
1,210,338	-				+0.3
1,210,338	-				+1.0
1,210,377	+				-1.5
1,210,377	+				-3.2
1,210,377	+				-2.4
1,210,378	-				-0.1
1,210,378	-				+0.1
1,210,381	+				+0.5
1,210,381	+				-1.5
1,210,381	+				-2.1
1,210,381	+				+0.2
1,210,382	-				-1.9
1,210,423	+				+0.9
1,210,423	+				+0.4
1,210,427	+				+0.2
1,210,427	+				-0.9
1,210,427	+				-3.2
1,210,427	+				-0.3
1,210,427	+				+0.8
1,210,427	+				-0.0
1,210,427	+				-1.1
1,210,428	-				+1.5
1,210,428	-				+1.4
1,210,428	-				+0.3
1,210,428	-				+0.6
1,210,428	-				+0.1
1,210,428	-				-2.4
1,210,428	-				-0.7
1,210,567	-		PFR28_01098	0.20	-0.4
1,210,567	-		PFR28_01098	0.20	+0.7
1,210,567	-		PFR28_01098	0.20	-0.4
1,210,567	-		PFR28_01098	0.20	-3.4
1,210,658	-		PFR28_01098	0.32	+0.7
1,210,658	-		PFR28_01098	0.32	+0.8
1,210,695	+		PFR28_01098	0.37	+0.1
1,210,912	+		PFR28_01098	0.64	+0.0
1,210,912	+		PFR28_01098	0.64	+1.2
1,210,912	+		PFR28_01098	0.64	-0.1
1,210,912	+		PFR28_01098	0.64	+0.3
1,210,912	+		PFR28_01098	0.64	+0.7
1,210,912	+		PFR28_01098	0.64	+1.1
1,210,912	+		PFR28_01098	0.64	-0.2
1,210,913	-		PFR28_01098	0.64	+1.3
1,210,913	-		PFR28_01098	0.64	-1.5
1,210,913	-		PFR28_01098	0.64	+0.7
1,210,913	-		PFR28_01098	0.64	-0.7
1,210,913	-		PFR28_01098	0.64	-0.9
1,210,913	-		PFR28_01098	0.64	+1.7
1,210,913	-		PFR28_01098	0.64	+0.5
1,210,913	-		PFR28_01098	0.64	-0.2
1,210,913	-		PFR28_01098	0.64	+0.2
1,210,913	-		PFR28_01098	0.64	+0.0
1,211,131	+				-4.1
1,211,131	+				-3.0
1,211,173	+				-0.9
1,211,174	-				-1.3
1,211,174	-				-0.3
1,211,195	+				+0.9
1,211,196	-				+0.8
1,211,196	-				+0.3
1,211,196	-				+0.1
1,211,196	-				-1.3
1,211,239	+				-0.5
1,211,239	+				-0.8
1,211,239	+				+0.2
1,211,239	+				+1.0
1,211,240	-				-0.0
1,211,240	-				-0.6
1,211,241	+				+0.6
1,211,242	-				-1.0
1,211,254	+				+1.6
1,211,289	+				+1.7
1,211,289	+				-2.0
1,211,331	+				+1.3
1,211,331	+				-2.1
1,211,331	+				+0.0
1,211,331	+				+0.5
1,211,331	+				-0.9
1,211,331	+				-1.0
1,211,331	+				+0.5
1,211,332	-				-0.1
1,211,332	-				-0.8
1,211,332	-				-2.5
1,211,358	+				-0.5
1,211,359	-				+0.1
1,211,359	-				-0.2
1,211,377	+				-0.4
1,211,429	-				+1.2
1,211,429	-				+1.9
1,211,485	+				+1.1
1,211,485	+				-2.2
1,211,628	-		PFR28_01099	0.12	-0.7
1,211,673	+		PFR28_01099	0.13	-2.6
1,211,673	+		PFR28_01099	0.13	+0.8
1,211,673	+		PFR28_01099	0.13	-3.2
1,211,673	+		PFR28_01099	0.13	+0.6
1,211,674	-		PFR28_01099	0.14	-0.5
1,211,718	+		PFR28_01099	0.15	-1.9
1,211,719	-		PFR28_01099	0.15	+1.0
1,211,719	-		PFR28_01099	0.15	+1.0
1,211,719	-		PFR28_01099	0.15	-1.3
1,211,736	+		PFR28_01099	0.16	-3.9
1,211,736	+		PFR28_01099	0.16	+1.1
1,211,736	+		PFR28_01099	0.16	+0.7
1,211,737	-		PFR28_01099	0.16	-0.6
1,211,737	-		PFR28_01099	0.16	+0.3
1,211,737	-		PFR28_01099	0.16	+0.1
1,211,737	-		PFR28_01099	0.16	+0.5
1,211,737	-		PFR28_01099	0.16	-0.5
1,211,765	-		PFR28_01099	0.17	+3.0
1,211,765	-		PFR28_01099	0.17	-0.5
1,211,765	-		PFR28_01099	0.17	-2.0
1,211,766	+		PFR28_01099	0.17	+0.5
1,211,766	+		PFR28_01099	0.17	-1.1
1,211,766	+		PFR28_01099	0.17	+0.5
1,211,766	+		PFR28_01099	0.17	+0.7
1,211,766	+		PFR28_01099	0.17	-0.1
1,211,766	+		PFR28_01099	0.17	+0.7
1,211,766	+		PFR28_01099	0.17	+0.1
1,211,766	+		PFR28_01099	0.17	+1.3
1,211,766	+		PFR28_01099	0.17	+0.9
1,211,766	+		PFR28_01099	0.17	-3.2
1,211,766	+		PFR28_01099	0.17	+0.0
1,211,766	+		PFR28_01099	0.17	-0.8
1,211,766	+		PFR28_01099	0.17	-0.6
1,211,766	+		PFR28_01099	0.17	-0.8
1,211,766	+		PFR28_01099	0.17	+1.1
1,211,766	+		PFR28_01099	0.17	-0.4
1,211,766	+		PFR28_01099	0.17	+0.7
1,211,766	+		PFR28_01099	0.17	-0.4
1,211,766	+		PFR28_01099	0.17	+2.1
1,211,766	+		PFR28_01099	0.17	-0.1
1,211,767	-		PFR28_01099	0.17	-2.0
1,211,767	-		PFR28_01099	0.17	+1.3
1,211,767	-		PFR28_01099	0.17	-2.9
1,211,767	-		PFR28_01099	0.17	+1.4
1,211,767	-		PFR28_01099	0.17	+1.9
1,211,767	-		PFR28_01099	0.17	-0.4
1,211,767	-		PFR28_01099	0.17	+2.0
1,211,767	-		PFR28_01099	0.17	-1.8
1,211,767	-		PFR28_01099	0.17	+0.2
1,211,767	-		PFR28_01099	0.17	-1.6
1,211,767	-		PFR28_01099	0.17	+0.8
1,211,767	-		PFR28_01099	0.17	-0.5
1,211,767	-		PFR28_01099	0.17	+0.3
1,211,767	-		PFR28_01099	0.17	+0.3
1,211,767	-		PFR28_01099	0.17	-0.2
1,211,773	+		PFR28_01099	0.17	+0.5
1,211,773	+		PFR28_01099	0.17	-1.9
1,211,774	-		PFR28_01099	0.17	-0.6
1,211,774	-		PFR28_01099	0.17	-4.0
1,211,830	+		PFR28_01099	0.19	-2.0
1,211,831	-		PFR28_01099	0.19	-0.5
1,211,855	-		PFR28_01099	0.20	+0.8
1,211,871	+		PFR28_01099	0.21	-1.0
1,211,871	+		PFR28_01099	0.21	+1.7
1,211,871	+		PFR28_01099	0.21	+0.2
1,211,872	-		PFR28_01099	0.21	-1.6
1,211,913	+		PFR28_01099	0.22	-0.5
1,211,913	+		PFR28_01099	0.22	+1.7
1,211,959	+		PFR28_01099	0.24	+1.5
1,211,959	+		PFR28_01099	0.24	+1.1
1,211,960	-		PFR28_01099	0.24	+0.3
1,212,070	+		PFR28_01099	0.28	+0.8
1,212,072	+		PFR28_01099	0.28	+0.7
1,212,072	+		PFR28_01099	0.28	-1.3
1,212,072	+		PFR28_01099	0.28	+0.3
1,212,072	+		PFR28_01099	0.28	-3.1
1,212,072	+		PFR28_01099	0.28	+0.0
1,212,072	+		PFR28_01099	0.28	+0.6
1,212,072	+		PFR28_01099	0.28	-1.5
1,212,072	+		PFR28_01099	0.28	+0.0
1,212,072	+		PFR28_01099	0.28	+0.0
1,212,072	+		PFR28_01099	0.28	+0.2
1,212,072	+		PFR28_01099	0.28	-3.6
1,212,072	+		PFR28_01099	0.28	-0.9
1,212,072	+		PFR28_01099	0.28	+1.6
1,212,072	+		PFR28_01099	0.28	+0.7
1,212,072	+		PFR28_01099	0.28	-0.6
1,212,072	+		PFR28_01099	0.28	+0.0
1,212,072	+		PFR28_01099	0.28	+0.6
1,212,073	-		PFR28_01099	0.28	+0.4
1,212,073	-		PFR28_01099	0.28	+0.2
1,212,073	-		PFR28_01099	0.28	+1.5
1,212,073	-		PFR28_01099	0.28	-1.0
1,212,073	-		PFR28_01099	0.28	-1.5
1,212,073	-		PFR28_01099	0.28	+0.3
1,212,073	-		PFR28_01099	0.28	-1.6
1,212,096	+		PFR28_01099	0.29	+2.7
1,212,096	+		PFR28_01099	0.29	+1.3
1,212,096	+		PFR28_01099	0.29	-0.6
1,212,096	+		PFR28_01099	0.29	-0.1
1,212,096	+		PFR28_01099	0.29	-0.5
1,212,096	+		PFR28_01099	0.29	-1.5
1,212,096	+		PFR28_01099	0.29	-3.2
1,212,096	+		PFR28_01099	0.29	+1.4
1,212,097	-		PFR28_01099	0.29	+1.4
1,212,097	-		PFR28_01099	0.29	+0.9
1,212,097	-		PFR28_01099	0.29	+0.9
1,212,097	-		PFR28_01099	0.29	+1.7
1,212,097	-		PFR28_01099	0.29	-0.4
1,212,097	-		PFR28_01099	0.29	+1.2
1,212,097	-		PFR28_01099	0.29	-1.2
1,212,159	+		PFR28_01099	0.31	-0.6
1,212,159	+		PFR28_01099	0.31	-1.5
1,212,160	-		PFR28_01099	0.31	-2.5
1,212,181	+		PFR28_01099	0.32	-2.6
1,212,241	-		PFR28_01099	0.34	-2.8
1,212,241	-		PFR28_01099	0.34	+1.4
1,212,287	-		PFR28_01099	0.36	+0.4
1,212,315	+		PFR28_01099	0.37	-1.9
1,212,315	+		PFR28_01099	0.37	-3.5
1,212,315	+		PFR28_01099	0.37	-0.8
1,212,315	+		PFR28_01099	0.37	+0.8
1,212,316	-		PFR28_01099	0.37	+1.3
1,212,316	-		PFR28_01099	0.37	-0.9
1,212,316	-		PFR28_01099	0.37	-0.4
1,212,492	+		PFR28_01099	0.43	+0.6
1,212,493	-		PFR28_01099	0.43	-0.5
1,212,525	+		PFR28_01099	0.45	-0.6
1,212,526	-		PFR28_01099	0.45	+0.5
1,212,553	-		PFR28_01099	0.46	-0.6
1,212,553	-		PFR28_01099	0.46	+1.7
1,212,750	+		PFR28_01099	0.53	-0.4
1,212,751	-		PFR28_01099	0.53	-1.1
1,212,751	-		PFR28_01099	0.53	-1.7
1,212,751	-		PFR28_01099	0.53	-1.8
1,213,017	+		PFR28_01099	0.63	+0.6
1,213,017	+		PFR28_01099	0.63	-0.6
1,213,068	+		PFR28_01099	0.64	+2.1
1,213,068	+		PFR28_01099	0.64	+0.7
1,213,069	-		PFR28_01099	0.64	-0.8
1,213,116	+		PFR28_01099	0.66	-1.2
1,213,183	-		PFR28_01099	0.69	-0.4
1,213,183	-		PFR28_01099	0.69	+1.8
1,213,183	-		PFR28_01099	0.69	+0.7
1,213,198	+		PFR28_01099	0.69	+1.0
1,213,198	+		PFR28_01099	0.69	-0.4
1,213,199	-		PFR28_01099	0.69	+0.4
1,213,440	+		PFR28_01099	0.78	+0.3
1,213,440	+		PFR28_01099	0.78	+0.1
1,213,440	+		PFR28_01099	0.78	-2.9
1,213,441	-		PFR28_01099	0.78	+0.8
1,213,441	-		PFR28_01099	0.78	+1.4
1,213,486	-		PFR28_01099	0.80	-3.2
1,213,486	-		PFR28_01099	0.80	-0.2
1,213,575	+		PFR28_01099	0.83	-1.9
1,213,575	+		PFR28_01099	0.83	-0.4
1,213,576	-		PFR28_01099	0.83	-0.4
1,213,576	-		PFR28_01099	0.83	+2.1
1,213,834	+				-0.1
1,213,834	+				-0.5
1,213,835	-				-0.3
1,213,835	-				+0.2
1,213,835	-				-0.6
1,213,835	-				+1.0
1,213,835	-				+1.0
1,213,980	+				+0.8
1,213,980	+				+0.6
1,213,980	+				-0.1
1,213,980	+				+1.1
1,213,980	+				-0.3
1,213,980	+				-0.4
1,213,981	-				-2.6
1,213,981	-				-2.3
1,213,981	-				+1.5
1,213,981	-				-1.0
1,213,986	+				-0.3
1,213,986	+				+1.4
1,213,987	-				+1.7
1,213,987	-				-0.9
1,214,101	+				+0.1
1,214,102	-				+1.5
1,214,102	-				-1.4
1,214,106	+				+1.3
1,214,107	-				-0.7
1,214,122	+				-3.7
1,214,122	+				+1.7
1,214,122	+				-0.3
1,214,122	+				-0.7
1,214,122	+				-0.2
1,214,122	+				+0.8
1,214,122	+				-3.0
1,214,122	+				-0.4
1,214,122	+				-0.3
1,214,123	-				-1.4
1,214,123	-				+0.1
1,214,123	-				+0.5
1,214,123	-				-0.6
1,214,123	-				+0.4
1,214,123	-				+2.7
1,214,123	-				+1.6
1,214,123	-				-1.2
1,214,174	-				+0.2
1,214,174	-				-1.7
1,214,310	-				-2.4
1,214,353	+		PFR28_01100	0.13	-1.9
1,214,353	+		PFR28_01100	0.13	+0.5
1,214,353	+		PFR28_01100	0.13	+0.3
1,214,353	+		PFR28_01100	0.13	+1.3
1,214,353	+		PFR28_01100	0.13	-0.7
1,214,354	-		PFR28_01100	0.13	-1.1
1,214,354	-		PFR28_01100	0.13	+0.8
1,214,986	+		PFR28_01100	0.72	+3.4