Strain Fitness in Pseudomonas sp. RS175 around PFR28_00575

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00573 and PFR28_00574 overlap by 14 nucleotidesPFR28_00574 and PFR28_00575 are separated by 17 nucleotidesPFR28_00575 and PFR28_00576 are separated by 146 nucleotides PFR28_00573: PFR28_00573 - Glucose-6-phosphate 1-dehydrogenase, at 614,684 to 616,153 _00573 PFR28_00574: PFR28_00574 - 6-phosphogluconolactonase, at 616,140 to 616,853 _00574 PFR28_00575: PFR28_00575 - 2-dehydro-3-deoxy-phosphogluconate aldolase, at 616,871 to 617,536 _00575 PFR28_00576: PFR28_00576 - Isopenicillin N epimerase, at 617,683 to 618,870 _00576 Position (kb) 616 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 615.938 kb on + strand, within PFR28_00573at 615.939 kb on - strand, within PFR28_00573at 616.073 kb on + strandat 616.473 kb on + strand, within PFR28_00574at 616.474 kb on - strand, within PFR28_00574at 616.729 kb on + strand, within PFR28_00574at 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.826 kb on + strandat 616.831 kb on + strandat 616.839 kb on + strandat 616.839 kb on + strandat 617.564 kb on - strandat 617.564 kb on - strandat 617.564 kb on - strandat 617.571 kb on + strandat 617.571 kb on + strandat 617.572 kb on - strandat 617.684 kb on + strandat 617.684 kb on + strandat 617.684 kb on + strandat 617.685 kb on - strandat 617.685 kb on - strandat 617.685 kb on - strandat 617.688 kb on + strandat 617.688 kb on + strandat 617.689 kb on - strandat 617.689 kb on - strandat 617.811 kb on - strand, within PFR28_00576at 617.886 kb on - strand, within PFR28_00576at 617.886 kb on - strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.005 kb on + strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.006 kb on - strand, within PFR28_00576at 618.070 kb on - strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.149 kb on + strand, within PFR28_00576at 618.150 kb on - strand, within PFR28_00576at 618.150 kb on - strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.347 kb on + strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.348 kb on - strand, within PFR28_00576at 618.398 kb on + strand, within PFR28_00576at 618.398 kb on + strand, within PFR28_00576at 618.506 kb on + strand, within PFR28_00576at 618.506 kb on + strand, within PFR28_00576at 618.507 kb on - strand, within PFR28_00576

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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615,938 + PFR28_00573 0.85 +0.8
615,939 - PFR28_00573 0.85 -1.2
616,073 + +0.1
616,473 + PFR28_00574 0.47 +2.2
616,474 - PFR28_00574 0.47 -0.8
616,729 + PFR28_00574 0.82 -0.6
616,826 + -0.8
616,826 + +0.8
616,826 + +1.2
616,826 + -1.4
616,826 + +0.6
616,826 + -2.0
616,826 + +0.2
616,826 + -1.7
616,826 + +1.7
616,826 + -1.0
616,826 + +2.5
616,831 + -0.6
616,839 + -1.1
616,839 + -0.4
617,564 - +1.2
617,564 - -2.8
617,564 - -0.0
617,571 + -2.9
617,571 + +0.3
617,572 - +0.2
617,684 + +1.6
617,684 + -0.2
617,684 + +0.5
617,685 - -0.2
617,685 - +1.4
617,685 - -2.6
617,688 + -1.9
617,688 + -3.1
617,689 - -0.2
617,689 - -0.6
617,811 - PFR28_00576 0.11 -1.1
617,886 - PFR28_00576 0.17 -0.5
617,886 - PFR28_00576 0.17 -1.0
618,005 + PFR28_00576 0.27 -1.8
618,005 + PFR28_00576 0.27 -0.4
618,005 + PFR28_00576 0.27 +0.8
618,005 + PFR28_00576 0.27 -1.8
618,005 + PFR28_00576 0.27 -0.6
618,005 + PFR28_00576 0.27 -2.6
618,006 - PFR28_00576 0.27 +1.4
618,006 - PFR28_00576 0.27 -3.5
618,006 - PFR28_00576 0.27 -0.7
618,006 - PFR28_00576 0.27 +0.8
618,006 - PFR28_00576 0.27 +0.8
618,006 - PFR28_00576 0.27 -2.7
618,006 - PFR28_00576 0.27 -2.2
618,006 - PFR28_00576 0.27 -2.9
618,070 - PFR28_00576 0.33 +0.5
618,149 + PFR28_00576 0.39 +2.5
618,149 + PFR28_00576 0.39 +0.4
618,149 + PFR28_00576 0.39 +0.3
618,149 + PFR28_00576 0.39 +0.5
618,149 + PFR28_00576 0.39 +0.3
618,149 + PFR28_00576 0.39 +1.2
618,150 - PFR28_00576 0.39 -0.1
618,150 - PFR28_00576 0.39 -1.7
618,347 + PFR28_00576 0.56 -1.9
618,347 + PFR28_00576 0.56 +0.7
618,347 + PFR28_00576 0.56 -1.9
618,347 + PFR28_00576 0.56 -1.8
618,347 + PFR28_00576 0.56 -0.8
618,348 - PFR28_00576 0.56 +1.2
618,348 - PFR28_00576 0.56 -1.6
618,348 - PFR28_00576 0.56 -0.3
618,348 - PFR28_00576 0.56 +0.4
618,398 + PFR28_00576 0.60 -1.9
618,398 + PFR28_00576 0.60 +1.8
618,506 + PFR28_00576 0.69 -2.9
618,506 + PFR28_00576 0.69 -1.2
618,507 - PFR28_00576 0.69 -1.3

Or see this region's nucleotide sequence