Strain Fitness in Pseudomonas sp. RS175 around PFR28_00064

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00063 and PFR28_00064 are separated by 264 nucleotidesPFR28_00064 and PFR28_00065 are separated by 115 nucleotidesPFR28_00065 and PFR28_00066 are separated by 118 nucleotides PFR28_00063: PFR28_00063 - Glycolate permease GlcA, at 72,980 to 74,671 _00063 PFR28_00064: PFR28_00064 - Pyruvate dehydrogenase complex repressor, at 74,936 to 75,703 _00064 PFR28_00065: PFR28_00065 - SsrA-binding protein, at 75,819 to 76,301 _00065 PFR28_00066: PFR28_00066 - hypothetical protein, at 76,420 to 77,823 _00066 Position (kb) 74 75 76Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 73.957 kb on - strand, within PFR28_00063at 73.957 kb on - strand, within PFR28_00063at 74.208 kb on + strand, within PFR28_00063at 74.401 kb on - strand, within PFR28_00063at 74.649 kb on + strandat 74.649 kb on + strandat 74.650 kb on - strandat 74.687 kb on - strandat 74.687 kb on - strandat 74.687 kb on - strandat 74.759 kb on - strandat 74.764 kb on - strandat 74.894 kb on + strandat 74.895 kb on - strandat 74.935 kb on + strandat 74.935 kb on + strandat 74.935 kb on + strandat 74.936 kb on - strandat 75.073 kb on - strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.152 kb on + strand, within PFR28_00064at 75.153 kb on - strand, within PFR28_00064at 75.153 kb on - strand, within PFR28_00064at 75.153 kb on - strand, within PFR28_00064at 75.153 kb on - strand, within PFR28_00064at 75.153 kb on - strand, within PFR28_00064at 75.153 kb on - strand, within PFR28_00064at 75.153 kb on - strand, within PFR28_00064at 75.272 kb on + strand, within PFR28_00064at 75.273 kb on - strand, within PFR28_00064at 75.273 kb on - strand, within PFR28_00064at 75.276 kb on - strand, within PFR28_00064at 75.347 kb on + strand, within PFR28_00064at 75.347 kb on + strand, within PFR28_00064at 75.347 kb on + strand, within PFR28_00064at 75.348 kb on - strand, within PFR28_00064at 75.348 kb on - strand, within PFR28_00064at 75.348 kb on - strand, within PFR28_00064at 75.348 kb on - strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.509 kb on + strand, within PFR28_00064at 75.510 kb on - strand, within PFR28_00064at 75.510 kb on - strand, within PFR28_00064at 75.563 kb on + strand, within PFR28_00064at 75.563 kb on + strand, within PFR28_00064at 75.564 kb on - strand, within PFR28_00064at 75.564 kb on - strand, within PFR28_00064at 75.564 kb on - strand, within PFR28_00064at 75.564 kb on - strand, within PFR28_00064at 75.619 kb on + strand, within PFR28_00064at 75.619 kb on + strand, within PFR28_00064at 75.619 kb on + strand, within PFR28_00064at 75.619 kb on + strand, within PFR28_00064at 75.619 kb on + strand, within PFR28_00064at 75.619 kb on + strand, within PFR28_00064at 75.620 kb on - strand, within PFR28_00064at 75.620 kb on - strand, within PFR28_00064at 75.620 kb on - strand, within PFR28_00064at 75.620 kb on - strand, within PFR28_00064at 75.626 kb on + strand, within PFR28_00064at 75.626 kb on + strand, within PFR28_00064at 75.626 kb on + strand, within PFR28_00064at 75.626 kb on + strand, within PFR28_00064at 75.627 kb on - strandat 75.627 kb on - strandat 75.627 kb on - strandat 75.627 kb on - strandat 75.627 kb on - strandat 75.699 kb on + strandat 75.699 kb on + strandat 75.699 kb on + strandat 75.699 kb on + strandat 75.700 kb on - strandat 75.700 kb on - strandat 75.701 kb on + strandat 75.701 kb on + strandat 75.701 kb on + strandat 75.701 kb on + strandat 75.701 kb on + strandat 75.702 kb on - strandat 75.702 kb on - strandat 75.702 kb on - strandat 75.702 kb on - strandat 75.702 kb on - strandat 75.702 kb on - strandat 75.702 kb on - strandat 75.764 kb on + strandat 75.820 kb on + strandat 76.302 kb on - strandat 76.315 kb on + strandat 76.315 kb on + strandat 76.316 kb on - strandat 76.316 kb on - strandat 76.316 kb on - strandat 76.316 kb on - strandat 76.316 kb on - strandat 76.476 kb on - strandat 76.476 kb on - strandat 76.509 kb on + strandat 76.509 kb on + strandat 76.509 kb on + strandat 76.512 kb on + strandat 76.512 kb on + strandat 76.512 kb on + strandat 76.512 kb on + strandat 76.512 kb on + strandat 76.513 kb on - strandat 76.513 kb on - strandat 76.513 kb on - strandat 76.529 kb on - strandat 76.529 kb on - strandat 76.529 kb on - strandat 76.544 kb on - strandat 76.563 kb on - strand, within PFR28_00066at 76.563 kb on - strand, within PFR28_00066at 76.563 kb on - strand, within PFR28_00066at 76.563 kb on - strand, within PFR28_00066

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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73,957 - PFR28_00063 0.58 -4.0
73,957 - PFR28_00063 0.58 -3.2
74,208 + PFR28_00063 0.73 -4.4
74,401 - PFR28_00063 0.84 -4.9
74,649 + -4.1
74,649 + -2.9
74,650 - -4.3
74,687 - +0.2
74,687 - -2.0
74,687 - -0.1
74,759 - -1.0
74,764 - -1.0
74,894 + -0.3
74,895 - +0.7
74,935 + +0.7
74,935 + -1.9
74,935 + +1.3
74,936 - +1.7
75,073 - PFR28_00064 0.18 -0.0
75,152 + PFR28_00064 0.28 -0.4
75,152 + PFR28_00064 0.28 -0.1
75,152 + PFR28_00064 0.28 +1.1
75,152 + PFR28_00064 0.28 +1.4
75,152 + PFR28_00064 0.28 -1.1
75,152 + PFR28_00064 0.28 +1.8
75,152 + PFR28_00064 0.28 +0.3
75,152 + PFR28_00064 0.28 +0.0
75,152 + PFR28_00064 0.28 -0.2
75,152 + PFR28_00064 0.28 +1.4
75,152 + PFR28_00064 0.28 +0.8
75,152 + PFR28_00064 0.28 -0.6
75,152 + PFR28_00064 0.28 +1.4
75,153 - PFR28_00064 0.28 +1.5
75,153 - PFR28_00064 0.28 -1.0
75,153 - PFR28_00064 0.28 +0.7
75,153 - PFR28_00064 0.28 +1.7
75,153 - PFR28_00064 0.28 +1.0
75,153 - PFR28_00064 0.28 +0.6
75,153 - PFR28_00064 0.28 +0.3
75,272 + PFR28_00064 0.44 +2.4
75,273 - PFR28_00064 0.44 -0.1
75,273 - PFR28_00064 0.44 +1.1
75,276 - PFR28_00064 0.44 +0.6
75,347 + PFR28_00064 0.54 +0.8
75,347 + PFR28_00064 0.54 +0.3
75,347 + PFR28_00064 0.54 +1.3
75,348 - PFR28_00064 0.54 +0.4
75,348 - PFR28_00064 0.54 +0.0
75,348 - PFR28_00064 0.54 +1.6
75,348 - PFR28_00064 0.54 -0.1
75,509 + PFR28_00064 0.75 -0.0
75,509 + PFR28_00064 0.75 +0.3
75,509 + PFR28_00064 0.75 +1.1
75,509 + PFR28_00064 0.75 -0.0
75,509 + PFR28_00064 0.75 +0.4
75,509 + PFR28_00064 0.75 +0.6
75,509 + PFR28_00064 0.75 +0.9
75,509 + PFR28_00064 0.75 +0.0
75,509 + PFR28_00064 0.75 +1.0
75,509 + PFR28_00064 0.75 +1.0
75,510 - PFR28_00064 0.75 +1.2
75,510 - PFR28_00064 0.75 +1.8
75,563 + PFR28_00064 0.82 -2.0
75,563 + PFR28_00064 0.82 +0.9
75,564 - PFR28_00064 0.82 -0.1
75,564 - PFR28_00064 0.82 +2.6
75,564 - PFR28_00064 0.82 +1.8
75,564 - PFR28_00064 0.82 +1.8
75,619 + PFR28_00064 0.89 -0.5
75,619 + PFR28_00064 0.89 +2.9
75,619 + PFR28_00064 0.89 +0.5
75,619 + PFR28_00064 0.89 -1.0
75,619 + PFR28_00064 0.89 +0.9
75,619 + PFR28_00064 0.89 +1.3
75,620 - PFR28_00064 0.89 +1.5
75,620 - PFR28_00064 0.89 +1.1
75,620 - PFR28_00064 0.89 -0.1
75,620 - PFR28_00064 0.89 +1.1
75,626 + PFR28_00064 0.90 +0.6
75,626 + PFR28_00064 0.90 -2.9
75,626 + PFR28_00064 0.90 -0.0
75,626 + PFR28_00064 0.90 -0.3
75,627 - -1.5
75,627 - +0.6
75,627 - -0.4
75,627 - +1.7
75,627 - +2.9
75,699 + -3.7
75,699 + -2.6
75,699 + -0.1
75,699 + -1.0
75,700 - +1.9
75,700 - +0.7
75,701 + -1.0
75,701 + +0.3
75,701 + +4.1
75,701 + -1.0
75,701 + +1.1
75,702 - -3.2
75,702 - -3.8
75,702 - +0.0
75,702 - +1.7
75,702 - +2.2
75,702 - +0.8
75,702 - +0.9
75,764 + +0.2
75,820 + -2.3
76,302 - -3.7
76,315 + -1.0
76,315 + +1.3
76,316 - -1.0
76,316 - +1.1
76,316 - -0.7
76,316 - -0.7
76,316 - -1.5
76,476 - +1.4
76,476 - -2.4
76,509 + +1.5
76,509 + -0.5
76,509 + +0.8
76,512 + -3.1
76,512 + -0.7
76,512 + +0.7
76,512 + +1.8
76,512 + +1.6
76,513 - +0.9
76,513 - +0.0
76,513 - +0.9
76,529 - +1.0
76,529 - +1.5
76,529 - +0.3
76,544 - -2.8
76,563 - PFR28_00066 0.10 -1.5
76,563 - PFR28_00066 0.10 -1.6
76,563 - PFR28_00066 0.10 +0.5
76,563 - PFR28_00066 0.10 -1.5

Or see this region's nucleotide sequence