Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26050 and LU632_RS26055 are separated by 44 nucleotides LU632_RS26055 and LU632_RS26060 are separated by 1 nucleotides LU632_RS26060 and LU632_RS26065 overlap by 20 nucleotides LU632_RS26065 and LU632_RS26070 are separated by 118 nucleotides
LU632_RS26050: LU632_RS26050 - DUF1073 domain-containing protein, at 17,772 to 19,157
_RS26050
LU632_RS26055: LU632_RS26055 - DUF2442 domain-containing protein, at 19,202 to 19,450
_RS26055
LU632_RS26060: LU632_RS26060 - CCDC90 family protein, at 19,452 to 19,715
_RS26060
LU632_RS26065: LU632_RS26065 - recombinase family protein, at 19,696 to 20,274
_RS26065
LU632_RS26070: LU632_RS26070 - phage terminase large subunit, at 20,393 to 21,637
_RS26070
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.243 kb on + strand, within LU632_RS26050 at 18.244 kb on - strand, within LU632_RS26050 at 18.244 kb on - strand, within LU632_RS26050 at 18.244 kb on - strand, within LU632_RS26050 at 18.244 kb on - strand, within LU632_RS26050 at 18.244 kb on - strand, within LU632_RS26050 at 18.274 kb on + strand, within LU632_RS26050 at 18.275 kb on - strand, within LU632_RS26050 at 18.293 kb on + strand, within LU632_RS26050 at 18.314 kb on + strand, within LU632_RS26050 at 18.401 kb on + strand, within LU632_RS26050 at 18.401 kb on + strand, within LU632_RS26050 at 18.442 kb on + strand, within LU632_RS26050 at 18.442 kb on + strand, within LU632_RS26050 at 18.442 kb on + strand, within LU632_RS26050 at 18.443 kb on - strand, within LU632_RS26050 at 18.443 kb on - strand, within LU632_RS26050 at 18.467 kb on + strand, within LU632_RS26050 at 18.468 kb on - strand, within LU632_RS26050 at 18.471 kb on - strand, within LU632_RS26050 at 18.471 kb on - strand, within LU632_RS26050 at 18.550 kb on + strand, within LU632_RS26050 at 18.551 kb on - strand, within LU632_RS26050 at 18.633 kb on - strand, within LU632_RS26050 at 18.637 kb on + strand, within LU632_RS26050 at 18.637 kb on + strand, within LU632_RS26050 at 18.637 kb on + strand, within LU632_RS26050 at 18.637 kb on + strand, within LU632_RS26050 at 18.638 kb on - strand, within LU632_RS26050 at 18.687 kb on + strand, within LU632_RS26050 at 18.688 kb on - strand, within LU632_RS26050 at 18.688 kb on - strand, within LU632_RS26050 at 18.817 kb on + strand, within LU632_RS26050 at 18.833 kb on + strand, within LU632_RS26050 at 18.834 kb on - strand, within LU632_RS26050 at 18.861 kb on - strand, within LU632_RS26050 at 18.896 kb on + strand, within LU632_RS26050 at 18.923 kb on + strand, within LU632_RS26050 at 18.923 kb on + strand, within LU632_RS26050 at 18.924 kb on - strand, within LU632_RS26050 at 18.924 kb on - strand, within LU632_RS26050 at 18.994 kb on + strand, within LU632_RS26050 at 18.995 kb on - strand, within LU632_RS26050 at 18.995 kb on - strand, within LU632_RS26050 at 19.042 kb on + strand at 19.042 kb on + strand at 19.043 kb on - strand at 19.043 kb on - strand at 19.102 kb on + strand at 19.102 kb on + strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.133 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.140 kb on - strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.170 kb on + strand at 19.170 kb on + strand at 19.171 kb on - strand at 19.174 kb on + strand at 19.175 kb on - strand at 19.197 kb on - strand at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.436 kb on - strand at 19.472 kb on + strand at 19.473 kb on - strand at 19.473 kb on - strand at 19.602 kb on - strand, within LU632_RS26060 at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.755 kb on + strand, within LU632_RS26065 at 19.755 kb on + strand, within LU632_RS26065 at 19.914 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.215 kb on + strand, within LU632_RS26065 at 20.275 kb on + strand at 20.275 kb on + strand at 20.395 kb on - strand at 20.420 kb on - strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.429 kb on - strand at 20.440 kb on + strand at 20.440 kb on + strand at 20.441 kb on - strand at 20.441 kb on - strand at 20.443 kb on + strand at 20.443 kb on + strand at 20.444 kb on - strand at 20.444 kb on - strand at 20.445 kb on + strand at 20.445 kb on + strand at 20.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 18,243 + LU632_RS26050 0.34 -1.8 18,244 - LU632_RS26050 0.34 -0.9 18,244 - LU632_RS26050 0.34 -0.2 18,244 - LU632_RS26050 0.34 -1.8 18,244 - LU632_RS26050 0.34 -1.5 18,244 - LU632_RS26050 0.34 -0.4 18,274 + LU632_RS26050 0.36 -1.6 18,275 - LU632_RS26050 0.36 -1.7 18,293 + LU632_RS26050 0.38 -1.5 18,314 + LU632_RS26050 0.39 -0.9 18,401 + LU632_RS26050 0.45 +0.2 18,401 + LU632_RS26050 0.45 -0.1 18,442 + LU632_RS26050 0.48 -1.8 18,442 + LU632_RS26050 0.48 +0.0 18,442 + LU632_RS26050 0.48 -1.3 18,443 - LU632_RS26050 0.48 +0.0 18,443 - LU632_RS26050 0.48 -2.0 18,467 + LU632_RS26050 0.50 -1.1 18,468 - LU632_RS26050 0.50 -2.1 18,471 - LU632_RS26050 0.50 +1.0 18,471 - LU632_RS26050 0.50 -1.0 18,550 + LU632_RS26050 0.56 -0.9 18,551 - LU632_RS26050 0.56 -0.6 18,633 - LU632_RS26050 0.62 -1.0 18,637 + LU632_RS26050 0.62 -0.6 18,637 + LU632_RS26050 0.62 -0.6 18,637 + LU632_RS26050 0.62 -0.8 18,637 + LU632_RS26050 0.62 -1.4 18,638 - LU632_RS26050 0.62 -1.2 18,687 + LU632_RS26050 0.66 -1.0 18,688 - LU632_RS26050 0.66 -1.4 18,688 - LU632_RS26050 0.66 -0.5 18,817 + LU632_RS26050 0.75 -0.5 18,833 + LU632_RS26050 0.77 -0.6 18,834 - LU632_RS26050 0.77 -2.4 18,861 - LU632_RS26050 0.79 -0.1 18,896 + LU632_RS26050 0.81 -0.0 18,923 + LU632_RS26050 0.83 -0.6 18,923 + LU632_RS26050 0.83 -1.5 18,924 - LU632_RS26050 0.83 -0.4 18,924 - LU632_RS26050 0.83 -0.4 18,994 + LU632_RS26050 0.88 -1.4 18,995 - LU632_RS26050 0.88 -2.0 18,995 - LU632_RS26050 0.88 -1.8 19,042 + -3.1 19,042 + -0.7 19,043 - -1.2 19,043 - -1.1 19,102 + -1.2 19,102 + -0.5 19,103 - -0.8 19,103 - -0.9 19,133 + -1.2 19,139 + -1.2 19,139 + -0.8 19,139 + -1.2 19,139 + -1.5 19,139 + +0.8 19,139 + -0.9 19,140 - -2.2 19,142 + -1.2 19,142 + -1.5 19,142 + -0.6 19,142 + -1.0 19,142 + -0.7 19,142 + -2.0 19,143 - -0.5 19,143 - -2.2 19,143 - -1.2 19,143 - -1.4 19,143 - -1.0 19,143 - -1.6 19,170 + -1.8 19,170 + -0.6 19,171 - -2.3 19,174 + +0.4 19,175 - -2.1 19,197 - -1.0 19,408 + LU632_RS26055 0.83 -0.6 19,408 + LU632_RS26055 0.83 -0.7 19,408 + LU632_RS26055 0.83 +2.4 19,408 + LU632_RS26055 0.83 +0.4 19,408 + LU632_RS26055 0.83 +0.0 19,408 + LU632_RS26055 0.83 -0.5 19,409 - LU632_RS26055 0.83 -1.0 19,409 - LU632_RS26055 0.83 -1.7 19,409 - LU632_RS26055 0.83 -1.0 19,409 - LU632_RS26055 0.83 -1.2 19,409 - LU632_RS26055 0.83 -1.3 19,409 - LU632_RS26055 0.83 -1.7 19,409 - LU632_RS26055 0.83 -3.2 19,409 - LU632_RS26055 0.83 -1.1 19,409 - LU632_RS26055 0.83 -1.6 19,409 - LU632_RS26055 0.83 -1.5 19,409 - LU632_RS26055 0.83 -1.6 19,409 - LU632_RS26055 0.83 -1.2 19,413 + LU632_RS26055 0.85 +0.9 19,413 + LU632_RS26055 0.85 +0.4 19,413 + LU632_RS26055 0.85 +0.2 19,413 + LU632_RS26055 0.85 +0.8 19,413 + LU632_RS26055 0.85 -0.4 19,414 - LU632_RS26055 0.85 -1.3 19,414 - LU632_RS26055 0.85 -0.2 19,414 - LU632_RS26055 0.85 -1.5 19,414 - LU632_RS26055 0.85 -1.8 19,414 - LU632_RS26055 0.85 -1.5 19,414 - LU632_RS26055 0.85 -1.4 19,414 - LU632_RS26055 0.85 -1.5 19,414 - LU632_RS26055 0.85 +0.4 19,436 - -0.5 19,472 + -0.4 19,473 - -1.6 19,473 - -1.3 19,602 - LU632_RS26060 0.57 -0.5 19,750 + -0.7 19,750 + +0.0 19,750 + +0.8 19,750 + +0.7 19,755 + LU632_RS26065 0.10 -0.8 19,755 + LU632_RS26065 0.10 -2.0 19,914 + LU632_RS26065 0.38 -0.4 20,129 + LU632_RS26065 0.75 +0.1 20,129 + LU632_RS26065 0.75 +1.1 20,215 + LU632_RS26065 0.90 +0.4 20,275 + -0.1 20,275 + +0.3 20,395 - -0.1 20,420 - -1.1 20,428 + -1.1 20,428 + +1.0 20,429 - -0.8 20,440 + -3.0 20,440 + -1.0 20,441 - -1.6 20,441 - -2.0 20,443 + -0.8 20,443 + -0.9 20,444 - -1.4 20,444 - -1.7 20,445 + -0.6 20,445 + -2.4 20,446 - -1.5
Or see this region's nucleotide sequence