Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26030 and LU632_RS26035 are separated by 17 nucleotides LU632_RS26035 and LU632_RS26040 are separated by 12 nucleotides LU632_RS26040 and LU632_RS26045 are separated by 18 nucleotides LU632_RS26045 and LU632_RS26050 overlap by 56 nucleotides
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
LU632_RS26035: LU632_RS26035 - hypothetical protein, at 15,278 to 15,760
_RS26035
LU632_RS26040: LU632_RS26040 - DUF2213 domain-containing protein, at 15,773 to 17,047
_RS26040
LU632_RS26045: LU632_RS26045 - phage head morphogenesis protein, at 17,066 to 17,827
_RS26045
LU632_RS26050: LU632_RS26050 - DUF1073 domain-containing protein, at 17,772 to 19,157
_RS26050
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.820 kb on - strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.869 kb on + strand, within LU632_RS26030 at 14.870 kb on - strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.891 kb on - strand, within LU632_RS26030 at 14.905 kb on - strand, within LU632_RS26030 at 14.944 kb on - strand, within LU632_RS26030 at 15.000 kb on - strand, within LU632_RS26030 at 15.035 kb on + strand, within LU632_RS26030 at 15.036 kb on - strand, within LU632_RS26030 at 15.096 kb on - strand, within LU632_RS26030 at 15.105 kb on + strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.119 kb on + strand, within LU632_RS26030 at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.202 kb on - strand at 15.279 kb on + strand at 15.279 kb on + strand at 15.280 kb on - strand at 15.280 kb on - strand at 15.288 kb on + strand at 15.328 kb on + strand, within LU632_RS26035 at 15.328 kb on + strand, within LU632_RS26035 at 15.329 kb on - strand, within LU632_RS26035 at 15.398 kb on - strand, within LU632_RS26035 at 15.416 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.426 kb on + strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.427 kb on - strand, within LU632_RS26035 at 15.475 kb on + strand, within LU632_RS26035 at 15.476 kb on - strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.491 kb on + strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.492 kb on - strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.573 kb on + strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.574 kb on - strand, within LU632_RS26035 at 15.645 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.661 kb on + strand, within LU632_RS26035 at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.712 kb on + strand at 15.713 kb on - strand at 15.713 kb on - strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.761 kb on + strand at 15.762 kb on - strand at 15.762 kb on - strand at 15.817 kb on + strand at 15.899 kb on + strand at 15.900 kb on - strand at 16.017 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.072 kb on + strand, within LU632_RS26040 at 16.109 kb on + strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.110 kb on - strand, within LU632_RS26040 at 16.153 kb on - strand, within LU632_RS26040 at 16.230 kb on - strand, within LU632_RS26040 at 16.249 kb on + strand, within LU632_RS26040 at 16.400 kb on - strand, within LU632_RS26040 at 16.471 kb on + strand, within LU632_RS26040 at 16.472 kb on - strand, within LU632_RS26040 at 16.472 kb on - strand, within LU632_RS26040 at 16.484 kb on + strand, within LU632_RS26040 at 16.526 kb on + strand, within LU632_RS26040 at 16.576 kb on + strand, within LU632_RS26040 at 16.577 kb on - strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.585 kb on + strand, within LU632_RS26040 at 16.623 kb on + strand, within LU632_RS26040 at 16.711 kb on + strand, within LU632_RS26040 at 16.711 kb on + strand, within LU632_RS26040 at 16.712 kb on - strand, within LU632_RS26040 at 16.712 kb on - strand, within LU632_RS26040 at 16.825 kb on + strand, within LU632_RS26040 at 16.825 kb on + strand, within LU632_RS26040 at 16.849 kb on + strand, within LU632_RS26040 at 16.941 kb on + strand at 17.005 kb on + strand at 17.037 kb on + strand at 17.037 kb on + strand at 17.037 kb on + strand at 17.038 kb on - strand at 17.040 kb on + strand at 17.040 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.067 kb on + strand at 17.068 kb on - strand at 17.068 kb on - strand at 17.068 kb on - strand at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.227 kb on + strand, within LU632_RS26045 at 17.228 kb on - strand, within LU632_RS26045 at 17.228 kb on - strand, within LU632_RS26045 at 17.229 kb on + strand, within LU632_RS26045 at 17.229 kb on + strand, within LU632_RS26045 at 17.229 kb on + strand, within LU632_RS26045 at 17.229 kb on + strand, within LU632_RS26045 at 17.230 kb on - strand, within LU632_RS26045 at 17.230 kb on - strand, within LU632_RS26045 at 17.230 kb on - strand, within LU632_RS26045 at 17.296 kb on + strand, within LU632_RS26045 at 17.297 kb on - strand, within LU632_RS26045 at 17.297 kb on - strand, within LU632_RS26045 at 17.305 kb on + strand, within LU632_RS26045 at 17.305 kb on + strand, within LU632_RS26045 at 17.306 kb on - strand, within LU632_RS26045 at 17.311 kb on + strand, within LU632_RS26045 at 17.311 kb on + strand, within LU632_RS26045 at 17.311 kb on + strand, within LU632_RS26045 at 17.327 kb on + strand, within LU632_RS26045 at 17.345 kb on + strand, within LU632_RS26045 at 17.346 kb on - strand, within LU632_RS26045 at 17.385 kb on - strand, within LU632_RS26045 at 17.408 kb on + strand, within LU632_RS26045 at 17.409 kb on - strand, within LU632_RS26045 at 17.495 kb on - strand, within LU632_RS26045 at 17.495 kb on - strand, within LU632_RS26045 at 17.495 kb on - strand, within LU632_RS26045 at 17.540 kb on - strand, within LU632_RS26045 at 17.557 kb on + strand, within LU632_RS26045 at 17.558 kb on - strand, within LU632_RS26045 at 17.558 kb on - strand, within LU632_RS26045 at 17.614 kb on + strand, within LU632_RS26045 at 17.615 kb on - strand, within LU632_RS26045 at 17.615 kb on - strand, within LU632_RS26045 at 17.615 kb on - strand, within LU632_RS26045 at 17.615 kb on - strand, within LU632_RS26045 at 17.618 kb on + strand, within LU632_RS26045 at 17.618 kb on + strand, within LU632_RS26045 at 17.618 kb on + strand, within LU632_RS26045 at 17.618 kb on + strand, within LU632_RS26045 at 17.619 kb on - strand, within LU632_RS26045 at 17.619 kb on - strand, within LU632_RS26045 at 17.619 kb on - strand, within LU632_RS26045 at 17.628 kb on + strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.629 kb on - strand, within LU632_RS26045 at 17.648 kb on + strand, within LU632_RS26045 at 17.648 kb on + strand, within LU632_RS26045 at 17.693 kb on - strand, within LU632_RS26045 at 17.695 kb on + strand, within LU632_RS26045 at 17.695 kb on + strand, within LU632_RS26045 at 17.695 kb on + strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.696 kb on - strand, within LU632_RS26045 at 17.736 kb on + strand, within LU632_RS26045 at 17.737 kb on - strand, within LU632_RS26045 at 17.773 kb on + strand at 17.773 kb on + strand at 17.774 kb on - strand at 17.844 kb on - strand at 17.844 kb on - strand at 17.882 kb on + strand at 17.882 kb on + strand at 17.938 kb on + strand, within LU632_RS26050 at 17.938 kb on + strand, within LU632_RS26050 at 17.938 kb on + strand, within LU632_RS26050 at 17.938 kb on + strand, within LU632_RS26050 at 17.939 kb on - strand, within LU632_RS26050 at 17.961 kb on + strand, within LU632_RS26050 at 18.014 kb on + strand, within LU632_RS26050 at 18.014 kb on + strand, within LU632_RS26050 at 18.014 kb on + strand, within LU632_RS26050
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 14,820 - LU632_RS26030 0.54 -2.4 14,842 + LU632_RS26030 0.56 -1.0 14,842 + LU632_RS26030 0.56 +0.4 14,843 - LU632_RS26030 0.56 -1.6 14,843 - LU632_RS26030 0.56 +0.1 14,843 - LU632_RS26030 0.56 +0.2 14,843 - LU632_RS26030 0.56 -0.2 14,869 + LU632_RS26030 0.59 -0.9 14,870 - LU632_RS26030 0.59 -0.5 14,890 + LU632_RS26030 0.61 -1.6 14,890 + LU632_RS26030 0.61 -0.6 14,890 + LU632_RS26030 0.61 -0.6 14,891 - LU632_RS26030 0.61 -1.2 14,905 - LU632_RS26030 0.63 -1.7 14,944 - LU632_RS26030 0.67 -1.7 15,000 - LU632_RS26030 0.73 -2.1 15,035 + LU632_RS26030 0.76 -0.2 15,036 - LU632_RS26030 0.76 -0.3 15,096 - LU632_RS26030 0.83 -1.9 15,105 + LU632_RS26030 0.84 +0.4 15,106 - LU632_RS26030 0.84 -0.7 15,106 - LU632_RS26030 0.84 -0.2 15,119 + LU632_RS26030 0.85 -0.3 15,180 + -1.0 15,180 + -2.2 15,180 + -2.6 15,180 + -1.0 15,180 + -0.6 15,181 - -2.2 15,181 - +0.6 15,181 - -0.6 15,202 - -1.6 15,279 + -0.4 15,279 + +1.0 15,280 - -2.0 15,280 - -1.4 15,288 + -0.7 15,328 + LU632_RS26035 0.10 -1.7 15,328 + LU632_RS26035 0.10 +0.4 15,329 - LU632_RS26035 0.11 -0.9 15,398 - LU632_RS26035 0.25 -2.6 15,416 + LU632_RS26035 0.29 -0.3 15,426 + LU632_RS26035 0.31 +1.0 15,426 + LU632_RS26035 0.31 -1.4 15,427 - LU632_RS26035 0.31 -1.5 15,427 - LU632_RS26035 0.31 -1.4 15,427 - LU632_RS26035 0.31 -0.7 15,475 + LU632_RS26035 0.41 -1.2 15,476 - LU632_RS26035 0.41 -1.2 15,491 + LU632_RS26035 0.44 -1.6 15,491 + LU632_RS26035 0.44 -0.7 15,491 + LU632_RS26035 0.44 -2.6 15,491 + LU632_RS26035 0.44 -2.0 15,491 + LU632_RS26035 0.44 -0.3 15,491 + LU632_RS26035 0.44 -1.2 15,492 - LU632_RS26035 0.44 -1.1 15,492 - LU632_RS26035 0.44 -2.2 15,492 - LU632_RS26035 0.44 -0.3 15,492 - LU632_RS26035 0.44 -0.9 15,492 - LU632_RS26035 0.44 -2.4 15,492 - LU632_RS26035 0.44 -3.2 15,573 + LU632_RS26035 0.61 -0.5 15,573 + LU632_RS26035 0.61 -1.2 15,574 - LU632_RS26035 0.61 +1.0 15,574 - LU632_RS26035 0.61 +0.4 15,574 - LU632_RS26035 0.61 -0.8 15,574 - LU632_RS26035 0.61 +0.0 15,574 - LU632_RS26035 0.61 -2.0 15,645 + LU632_RS26035 0.76 -0.6 15,661 + LU632_RS26035 0.79 -0.7 15,661 + LU632_RS26035 0.79 -1.2 15,661 + LU632_RS26035 0.79 +0.7 15,712 + -0.9 15,712 + -1.2 15,712 + -0.4 15,712 + -1.2 15,713 - -0.6 15,713 - +0.4 15,761 + -1.0 15,761 + -0.4 15,761 + -1.1 15,761 + -1.6 15,761 + -0.2 15,761 + -1.6 15,761 + -2.0 15,762 - -0.3 15,762 - -0.6 15,817 + -0.6 15,899 + -1.8 15,900 - -1.2 16,017 + LU632_RS26040 0.19 +1.0 16,072 + LU632_RS26040 0.23 -1.0 16,072 + LU632_RS26040 0.23 +0.1 16,109 + LU632_RS26040 0.26 +2.4 16,110 - LU632_RS26040 0.26 -1.2 16,110 - LU632_RS26040 0.26 -1.2 16,110 - LU632_RS26040 0.26 -0.5 16,110 - LU632_RS26040 0.26 +1.0 16,153 - LU632_RS26040 0.30 -2.2 16,230 - LU632_RS26040 0.36 -0.4 16,249 + LU632_RS26040 0.37 -0.1 16,400 - LU632_RS26040 0.49 -0.6 16,471 + LU632_RS26040 0.55 -0.4 16,472 - LU632_RS26040 0.55 -1.8 16,472 - LU632_RS26040 0.55 -0.2 16,484 + LU632_RS26040 0.56 -0.8 16,526 + LU632_RS26040 0.59 +0.4 16,576 + LU632_RS26040 0.63 +1.4 16,577 - LU632_RS26040 0.63 -2.6 16,585 + LU632_RS26040 0.64 -2.0 16,585 + LU632_RS26040 0.64 -1.0 16,585 + LU632_RS26040 0.64 -0.6 16,585 + LU632_RS26040 0.64 -1.3 16,585 + LU632_RS26040 0.64 -0.9 16,623 + LU632_RS26040 0.67 +0.1 16,711 + LU632_RS26040 0.74 -0.1 16,711 + LU632_RS26040 0.74 -0.9 16,712 - LU632_RS26040 0.74 -2.4 16,712 - LU632_RS26040 0.74 -2.4 16,825 + LU632_RS26040 0.83 -0.6 16,825 + LU632_RS26040 0.83 -0.5 16,849 + LU632_RS26040 0.84 -1.3 16,941 + -0.6 17,005 + -0.7 17,037 + -1.6 17,037 + -1.8 17,037 + -0.8 17,038 - +0.4 17,040 + -1.0 17,040 + -1.3 17,067 + +0.2 17,067 + -1.7 17,067 + +1.0 17,067 + -0.0 17,067 + +0.1 17,067 + -0.5 17,068 - -2.0 17,068 - -3.6 17,068 - -2.8 17,227 + LU632_RS26045 0.21 -0.2 17,227 + LU632_RS26045 0.21 +0.5 17,227 + LU632_RS26045 0.21 -0.1 17,227 + LU632_RS26045 0.21 -0.5 17,227 + LU632_RS26045 0.21 +0.5 17,227 + LU632_RS26045 0.21 +0.4 17,227 + LU632_RS26045 0.21 +0.4 17,227 + LU632_RS26045 0.21 +0.7 17,227 + LU632_RS26045 0.21 -0.3 17,227 + LU632_RS26045 0.21 +0.6 17,227 + LU632_RS26045 0.21 +0.5 17,228 - LU632_RS26045 0.21 -2.4 17,228 - LU632_RS26045 0.21 -2.9 17,229 + LU632_RS26045 0.21 +0.5 17,229 + LU632_RS26045 0.21 -0.5 17,229 + LU632_RS26045 0.21 +0.6 17,229 + LU632_RS26045 0.21 +0.7 17,230 - LU632_RS26045 0.22 -2.5 17,230 - LU632_RS26045 0.22 -2.0 17,230 - LU632_RS26045 0.22 -0.4 17,296 + LU632_RS26045 0.30 -0.4 17,297 - LU632_RS26045 0.30 -2.9 17,297 - LU632_RS26045 0.30 -2.4 17,305 + LU632_RS26045 0.31 -1.3 17,305 + LU632_RS26045 0.31 -0.0 17,306 - LU632_RS26045 0.31 -2.2 17,311 + LU632_RS26045 0.32 -0.1 17,311 + LU632_RS26045 0.32 -0.5 17,311 + LU632_RS26045 0.32 -0.1 17,327 + LU632_RS26045 0.34 +0.3 17,345 + LU632_RS26045 0.37 -0.3 17,346 - LU632_RS26045 0.37 -2.2 17,385 - LU632_RS26045 0.42 -2.3 17,408 + LU632_RS26045 0.45 +1.4 17,409 - LU632_RS26045 0.45 -0.6 17,495 - LU632_RS26045 0.56 -1.4 17,495 - LU632_RS26045 0.56 -1.7 17,495 - LU632_RS26045 0.56 -1.2 17,540 - LU632_RS26045 0.62 -0.6 17,557 + LU632_RS26045 0.64 -0.4 17,558 - LU632_RS26045 0.65 -1.3 17,558 - LU632_RS26045 0.65 -1.3 17,614 + LU632_RS26045 0.72 -0.2 17,615 - LU632_RS26045 0.72 -1.9 17,615 - LU632_RS26045 0.72 -1.6 17,615 - LU632_RS26045 0.72 -1.3 17,615 - LU632_RS26045 0.72 -1.2 17,618 + LU632_RS26045 0.72 -0.4 17,618 + LU632_RS26045 0.72 +1.4 17,618 + LU632_RS26045 0.72 -0.5 17,618 + LU632_RS26045 0.72 +0.0 17,619 - LU632_RS26045 0.73 +0.4 17,619 - LU632_RS26045 0.73 -1.3 17,619 - LU632_RS26045 0.73 -1.9 17,628 + LU632_RS26045 0.74 +0.8 17,629 - LU632_RS26045 0.74 -3.0 17,629 - LU632_RS26045 0.74 -2.7 17,629 - LU632_RS26045 0.74 -0.4 17,629 - LU632_RS26045 0.74 -0.9 17,629 - LU632_RS26045 0.74 -2.8 17,629 - LU632_RS26045 0.74 -1.0 17,629 - LU632_RS26045 0.74 -0.2 17,648 + LU632_RS26045 0.76 +0.5 17,648 + LU632_RS26045 0.76 -0.2 17,693 - LU632_RS26045 0.82 -0.9 17,695 + LU632_RS26045 0.83 +0.4 17,695 + LU632_RS26045 0.83 +1.1 17,695 + LU632_RS26045 0.83 +0.4 17,696 - LU632_RS26045 0.83 +0.4 17,696 - LU632_RS26045 0.83 -0.1 17,696 - LU632_RS26045 0.83 -0.5 17,696 - LU632_RS26045 0.83 -0.3 17,696 - LU632_RS26045 0.83 -0.1 17,736 + LU632_RS26045 0.88 -0.5 17,737 - LU632_RS26045 0.88 -1.0 17,773 + +0.2 17,773 + +0.2 17,774 - +0.1 17,844 - -0.9 17,844 - -0.6 17,882 + -1.6 17,882 + -0.8 17,938 + LU632_RS26050 0.12 -0.5 17,938 + LU632_RS26050 0.12 -1.2 17,938 + LU632_RS26050 0.12 +1.0 17,938 + LU632_RS26050 0.12 -2.1 17,939 - LU632_RS26050 0.12 -1.4 17,961 + LU632_RS26050 0.14 -3.1 18,014 + LU632_RS26050 0.17 -1.1 18,014 + LU632_RS26050 0.17 -1.4 18,014 + LU632_RS26050 0.17 +0.0
Or see this region's nucleotide sequence