Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25760 and LU632_RS25765 are separated by 51 nucleotides LU632_RS25765 and LU632_RS25770 are separated by 703 nucleotides LU632_RS25770 and LU632_RS25775 are separated by 150 nucleotides LU632_RS25775 and LU632_RS25780 are separated by 11 nucleotides
LU632_RS25760: LU632_RS25760 - hypothetical protein, at 7,054 to 7,383
_RS25760
LU632_RS25765: LU632_RS25765 - hypothetical protein, at 7,435 to 7,629
_RS25765
LU632_RS25770: LU632_RS25770 - relaxosome protein TraM, at 8,333 to 8,740
_RS25770
LU632_RS25775: LU632_RS25775 - DUF5710 domain-containing protein, at 8,891 to 9,511
_RS25775
LU632_RS25780: LU632_RS25780 - helix-turn-helix domain-containing protein, at 9,523 to 10,080
_RS25780
Position (kb) 8
9 Strain fitness (log2 ratio) -2
-1
0
1
2 at 7.681 kb on + strand at 7.683 kb on + strand at 7.684 kb on - strand at 7.716 kb on + strand at 7.716 kb on + strand at 7.717 kb on - strand at 7.717 kb on - strand at 7.791 kb on + strand at 7.954 kb on - strand at 8.054 kb on - strand at 8.466 kb on + strand, within LU632_RS25770 at 8.517 kb on + strand, within LU632_RS25770 at 8.522 kb on - strand, within LU632_RS25770 at 8.527 kb on - strand, within LU632_RS25770 at 8.654 kb on - strand, within LU632_RS25770 at 8.869 kb on - strand at 9.303 kb on + strand, within LU632_RS25775 at 9.420 kb on + strand, within LU632_RS25775 at 9.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 7,681 + -1.2 7,683 + +0.3 7,684 - -1.4 7,716 + -0.3 7,716 + -1.4 7,717 - -0.4 7,717 - +0.5 7,791 + +0.4 7,954 - -0.3 8,054 - +2.6 8,466 + LU632_RS25770 0.33 -1.3 8,517 + LU632_RS25770 0.45 +0.2 8,522 - LU632_RS25770 0.46 -0.4 8,527 - LU632_RS25770 0.48 +1.1 8,654 - LU632_RS25770 0.79 -2.3 8,869 - +0.9 9,303 + LU632_RS25775 0.66 +0.4 9,420 + LU632_RS25775 0.85 -1.2 9,483 + -0.3
Or see this region's nucleotide sequence