Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25730 and LU632_RS25735 are separated by 235 nucleotides LU632_RS25735 and LU632_RS25740 overlap by 4 nucleotides LU632_RS25740 and LU632_RS25745 are separated by 467 nucleotides
LU632_RS25730: LU632_RS25730 - recombinase family protein, at 3,407 to 4,379
_RS25730
LU632_RS25735: LU632_RS25735 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,615 to 4,950
_RS25735
LU632_RS25740: LU632_RS25740 - hypothetical protein, at 4,947 to 5,303
_RS25740
LU632_RS25745: LU632_RS25745 - hypothetical protein, at 5,771 to 6,076
_RS25745
Position (kb) 4
5 Strain fitness (log2 ratio) -1
0
1 at 3.703 kb on + strand, within LU632_RS25730 at 3.703 kb on + strand, within LU632_RS25730 at 3.725 kb on + strand, within LU632_RS25730 at 3.725 kb on + strand, within LU632_RS25730 at 3.725 kb on + strand, within LU632_RS25730 at 3.725 kb on + strand, within LU632_RS25730 at 3.726 kb on - strand, within LU632_RS25730 at 3.726 kb on - strand, within LU632_RS25730 at 3.726 kb on - strand, within LU632_RS25730 at 3.726 kb on - strand, within LU632_RS25730 at 3.726 kb on - strand, within LU632_RS25730 at 3.749 kb on - strand, within LU632_RS25730 at 3.772 kb on - strand, within LU632_RS25730 at 4.121 kb on + strand, within LU632_RS25730 at 4.122 kb on - strand, within LU632_RS25730 at 4.178 kb on + strand, within LU632_RS25730 at 4.178 kb on + strand, within LU632_RS25730 at 4.178 kb on + strand, within LU632_RS25730 at 4.178 kb on + strand, within LU632_RS25730 at 4.179 kb on - strand, within LU632_RS25730 at 4.179 kb on - strand, within LU632_RS25730 at 4.179 kb on - strand, within LU632_RS25730 at 4.181 kb on + strand, within LU632_RS25730 at 4.181 kb on + strand, within LU632_RS25730 at 4.181 kb on + strand, within LU632_RS25730 at 4.181 kb on + strand, within LU632_RS25730 at 4.181 kb on + strand, within LU632_RS25730 at 4.181 kb on + strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.182 kb on - strand, within LU632_RS25730 at 4.388 kb on + strand at 4.432 kb on + strand at 4.433 kb on - strand at 4.436 kb on + strand at 4.479 kb on - strand at 4.483 kb on + strand at 4.537 kb on + strand at 4.828 kb on + strand, within LU632_RS25735 at 4.916 kb on - strand, within LU632_RS25735 at 5.198 kb on + strand, within LU632_RS25740 at 5.198 kb on + strand, within LU632_RS25740 at 5.301 kb on + strand at 5.401 kb on + strand at 5.401 kb on + strand at 5.488 kb on + strand at 5.488 kb on + strand at 5.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 3,703 + LU632_RS25730 0.30 +0.1 3,703 + LU632_RS25730 0.30 +0.6 3,725 + LU632_RS25730 0.33 -0.3 3,725 + LU632_RS25730 0.33 -0.1 3,725 + LU632_RS25730 0.33 +1.1 3,725 + LU632_RS25730 0.33 +0.3 3,726 - LU632_RS25730 0.33 -0.2 3,726 - LU632_RS25730 0.33 +0.1 3,726 - LU632_RS25730 0.33 +1.6 3,726 - LU632_RS25730 0.33 +0.9 3,726 - LU632_RS25730 0.33 -0.4 3,749 - LU632_RS25730 0.35 -0.7 3,772 - LU632_RS25730 0.38 +1.2 4,121 + LU632_RS25730 0.73 -0.7 4,122 - LU632_RS25730 0.73 -0.1 4,178 + LU632_RS25730 0.79 -1.4 4,178 + LU632_RS25730 0.79 -0.5 4,178 + LU632_RS25730 0.79 +0.1 4,178 + LU632_RS25730 0.79 -0.2 4,179 - LU632_RS25730 0.79 +0.1 4,179 - LU632_RS25730 0.79 +0.6 4,179 - LU632_RS25730 0.79 +0.5 4,181 + LU632_RS25730 0.80 -0.9 4,181 + LU632_RS25730 0.80 +0.1 4,181 + LU632_RS25730 0.80 +0.5 4,181 + LU632_RS25730 0.80 -0.3 4,181 + LU632_RS25730 0.80 -0.7 4,181 + LU632_RS25730 0.80 +1.1 4,182 - LU632_RS25730 0.80 +0.1 4,182 - LU632_RS25730 0.80 +1.2 4,182 - LU632_RS25730 0.80 +0.2 4,182 - LU632_RS25730 0.80 +0.3 4,182 - LU632_RS25730 0.80 +0.6 4,182 - LU632_RS25730 0.80 -0.1 4,182 - LU632_RS25730 0.80 +0.1 4,182 - LU632_RS25730 0.80 +0.2 4,182 - LU632_RS25730 0.80 -0.2 4,182 - LU632_RS25730 0.80 +1.3 4,182 - LU632_RS25730 0.80 +1.1 4,388 + -0.4 4,432 + +0.5 4,433 - +0.2 4,436 + +1.1 4,479 - +0.2 4,483 + +0.1 4,537 + -0.1 4,828 + LU632_RS25735 0.63 -1.1 4,916 - LU632_RS25735 0.90 -0.4 5,198 + LU632_RS25740 0.70 +1.2 5,198 + LU632_RS25740 0.70 -1.2 5,301 + +0.6 5,401 + -1.3 5,401 + +0.4 5,488 + +0.1 5,488 + +0.4 5,533 - +0.5
Or see this region's nucleotide sequence