Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25495

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25490 and LU632_RS25495 are separated by 417 nucleotidesLU632_RS25495 and LU632_RS25500 overlap by 8 nucleotidesLU632_RS25500 and LU632_RS25505 are separated by 252 nucleotides LU632_RS25490: LU632_RS25490 - antirestriction protein, at 30,946 to 31,524 _RS25490 LU632_RS25495: LU632_RS25495 - type II toxin-antitoxin system MqsA family antitoxin, at 31,942 to 32,256 _RS25495 LU632_RS25500: LU632_RS25500 - toxin, at 32,249 to 32,593 _RS25500 LU632_RS25505: LU632_RS25505 - methyltransferase, at 32,846 to 33,148 _RS25505 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 30.991 kb on - strandat 31.001 kb on + strandat 31.017 kb on - strand, within LU632_RS25490at 31.017 kb on - strand, within LU632_RS25490at 31.017 kb on - strand, within LU632_RS25490at 31.053 kb on - strand, within LU632_RS25490at 31.096 kb on + strand, within LU632_RS25490at 31.097 kb on - strand, within LU632_RS25490at 31.097 kb on - strand, within LU632_RS25490at 31.097 kb on - strand, within LU632_RS25490at 31.151 kb on + strand, within LU632_RS25490at 31.152 kb on - strand, within LU632_RS25490at 31.175 kb on + strand, within LU632_RS25490at 31.199 kb on + strand, within LU632_RS25490at 31.199 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.230 kb on + strand, within LU632_RS25490at 31.231 kb on - strand, within LU632_RS25490at 31.231 kb on - strand, within LU632_RS25490at 31.231 kb on - strand, within LU632_RS25490at 31.295 kb on + strand, within LU632_RS25490at 31.295 kb on + strand, within LU632_RS25490at 31.295 kb on + strand, within LU632_RS25490at 31.296 kb on - strand, within LU632_RS25490at 31.354 kb on + strand, within LU632_RS25490at 31.834 kb on + strandat 31.835 kb on - strandat 31.910 kb on - strandat 31.934 kb on + strandat 31.935 kb on - strandat 31.935 kb on - strandat 32.101 kb on - strand, within LU632_RS25495at 32.344 kb on - strand, within LU632_RS25500at 32.348 kb on - strand, within LU632_RS25500at 32.348 kb on - strand, within LU632_RS25500at 32.388 kb on + strand, within LU632_RS25500at 32.389 kb on - strand, within LU632_RS25500at 32.389 kb on - strand, within LU632_RS25500at 32.420 kb on - strand, within LU632_RS25500at 32.444 kb on + strand, within LU632_RS25500at 32.522 kb on - strand, within LU632_RS25500at 32.553 kb on + strand, within LU632_RS25500at 32.554 kb on - strand, within LU632_RS25500at 32.576 kb on + strandat 32.579 kb on - strandat 32.579 kb on - strandat 32.579 kb on - strandat 32.579 kb on - strandat 32.583 kb on - strandat 32.590 kb on - strandat 32.590 kb on - strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.742 kb on - strandat 32.742 kb on - strandat 32.742 kb on - strandat 32.742 kb on - strandat 32.859 kb on + strandat 32.928 kb on + strand, within LU632_RS25505at 32.929 kb on + strand, within LU632_RS25505at 32.929 kb on - strand, within LU632_RS25505at 32.962 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.149 kb on + strandat 33.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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30,991 - -0.1
31,001 + +0.6
31,017 - LU632_RS25490 0.12 +0.2
31,017 - LU632_RS25490 0.12 -0.6
31,017 - LU632_RS25490 0.12 -1.3
31,053 - LU632_RS25490 0.18 -0.9
31,096 + LU632_RS25490 0.26 -1.9
31,097 - LU632_RS25490 0.26 +0.7
31,097 - LU632_RS25490 0.26 +0.6
31,097 - LU632_RS25490 0.26 +0.2
31,151 + LU632_RS25490 0.35 -0.1
31,152 - LU632_RS25490 0.36 -1.0
31,175 + LU632_RS25490 0.40 +0.5
31,199 + LU632_RS25490 0.44 -0.1
31,199 + LU632_RS25490 0.44 +0.6
31,230 + LU632_RS25490 0.49 -0.6
31,230 + LU632_RS25490 0.49 -0.3
31,230 + LU632_RS25490 0.49 +0.0
31,230 + LU632_RS25490 0.49 +0.6
31,230 + LU632_RS25490 0.49 +1.1
31,230 + LU632_RS25490 0.49 +0.6
31,230 + LU632_RS25490 0.49 -0.8
31,230 + LU632_RS25490 0.49 -0.2
31,230 + LU632_RS25490 0.49 +1.2
31,230 + LU632_RS25490 0.49 -0.9
31,231 - LU632_RS25490 0.49 -0.8
31,231 - LU632_RS25490 0.49 +0.0
31,231 - LU632_RS25490 0.49 -0.5
31,295 + LU632_RS25490 0.60 -0.7
31,295 + LU632_RS25490 0.60 +0.0
31,295 + LU632_RS25490 0.60 -0.2
31,296 - LU632_RS25490 0.60 -0.7
31,354 + LU632_RS25490 0.70 -1.0
31,834 + +0.3
31,835 - +2.3
31,910 - +0.0
31,934 + +0.4
31,935 - -0.1
31,935 - +0.6
32,101 - LU632_RS25495 0.50 -1.4
32,344 - LU632_RS25500 0.28 +0.3
32,348 - LU632_RS25500 0.29 -0.3
32,348 - LU632_RS25500 0.29 -2.2
32,388 + LU632_RS25500 0.40 +1.2
32,389 - LU632_RS25500 0.41 +1.2
32,389 - LU632_RS25500 0.41 +0.7
32,420 - LU632_RS25500 0.50 -0.5
32,444 + LU632_RS25500 0.57 -0.2
32,522 - LU632_RS25500 0.79 -0.1
32,553 + LU632_RS25500 0.88 +0.4
32,554 - LU632_RS25500 0.88 +0.9
32,576 + +0.4
32,579 - -0.3
32,579 - +0.7
32,579 - -1.3
32,579 - -0.6
32,583 - +2.0
32,590 - -1.1
32,590 - -0.5
32,679 + +0.3
32,679 + -0.0
32,679 + -0.7
32,679 + +0.1
32,679 + -0.6
32,679 + +1.1
32,679 + +0.2
32,679 + +1.2
32,679 + +1.3
32,679 + -0.4
32,679 + -0.4
32,680 - +0.6
32,680 - -0.1
32,680 - -0.3
32,680 - -0.1
32,680 - -0.1
32,680 - -1.8
32,680 - +0.0
32,680 - -1.4
32,680 - -0.3
32,741 + -0.5
32,741 + -0.5
32,741 + -0.7
32,741 + +0.3
32,741 + -0.8
32,741 + +2.3
32,741 + +0.6
32,741 + -0.3
32,742 - +0.2
32,742 - +0.0
32,742 - +0.4
32,742 - +0.5
32,859 + +1.6
32,928 + LU632_RS25505 0.27 -0.5
32,929 + LU632_RS25505 0.27 -0.8
32,929 - LU632_RS25505 0.27 -0.5
32,962 + LU632_RS25505 0.38 -0.1
33,096 + LU632_RS25505 0.83 +0.0
33,096 + LU632_RS25505 0.83 +0.0
33,096 + LU632_RS25505 0.83 +0.3
33,096 + LU632_RS25505 0.83 -0.0
33,096 + LU632_RS25505 0.83 -0.7
33,096 + LU632_RS25505 0.83 +0.0
33,096 + LU632_RS25505 0.83 -1.0
33,096 + LU632_RS25505 0.83 -0.2
33,097 - LU632_RS25505 0.83 +0.2
33,097 - LU632_RS25505 0.83 +0.0
33,097 - LU632_RS25505 0.83 -0.7
33,097 - LU632_RS25505 0.83 -0.5
33,097 - LU632_RS25505 0.83 -0.4
33,097 - LU632_RS25505 0.83 -2.2
33,097 - LU632_RS25505 0.83 +0.5
33,149 + -0.8
33,150 - +0.6

Or see this region's nucleotide sequence