Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24485 and LU632_RS24490 are separated by 537 nucleotides LU632_RS24490 and LU632_RS24495 overlap by 23 nucleotides LU632_RS24495 and LU632_RS24500 are separated by 96 nucleotides
LU632_RS24485: LU632_RS24485 - 16S ribosomal RNA, at 4,670,138 to 4,671,679
_RS24485
LU632_RS24490: LU632_RS24490 - hypothetical protein, at 4,672,217 to 4,672,414
_RS24490
LU632_RS24495: LU632_RS24495 - IS6 family transposase, at 4,672,392 to 4,673,088
_RS24495
LU632_RS24500: LU632_RS24500 - glycoside hydrolase family 5 protein, at 4,673,185 to 4,674,072
_RS24500
Position (kb) 4672
4673 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4671.977 kb on + strand at 4672.078 kb on - strand at 4672.130 kb on + strand at 4672.131 kb on - strand at 4672.158 kb on - strand at 4672.162 kb on - strand at 4672.168 kb on - strand at 4672.195 kb on + strand at 4672.196 kb on - strand at 4672.237 kb on + strand, within LU632_RS24490 at 4672.300 kb on + strand, within LU632_RS24490 at 4672.361 kb on - strand, within LU632_RS24490 at 4672.394 kb on - strand at 4672.397 kb on - strand at 4672.471 kb on + strand, within LU632_RS24495 at 4672.471 kb on + strand, within LU632_RS24495 at 4672.472 kb on - strand, within LU632_RS24495 at 4672.476 kb on + strand, within LU632_RS24495 at 4672.476 kb on + strand, within LU632_RS24495 at 4672.641 kb on + strand, within LU632_RS24495 at 4672.641 kb on + strand, within LU632_RS24495 at 4672.642 kb on - strand, within LU632_RS24495 at 4672.642 kb on - strand, within LU632_RS24495 at 4672.642 kb on - strand, within LU632_RS24495 at 4672.643 kb on + strand, within LU632_RS24495 at 4672.644 kb on - strand, within LU632_RS24495 at 4672.667 kb on + strand, within LU632_RS24495 at 4672.668 kb on - strand, within LU632_RS24495 at 4672.673 kb on + strand, within LU632_RS24495 at 4672.836 kb on + strand, within LU632_RS24495 at 4672.837 kb on - strand, within LU632_RS24495 at 4672.837 kb on - strand, within LU632_RS24495 at 4672.886 kb on - strand, within LU632_RS24495 at 4672.890 kb on - strand, within LU632_RS24495 at 4672.925 kb on - strand, within LU632_RS24495 at 4673.028 kb on - strand at 4673.071 kb on + strand at 4673.193 kb on + strand at 4673.218 kb on - strand at 4673.218 kb on - strand at 4673.218 kb on - strand at 4673.221 kb on + strand at 4673.221 kb on - strand at 4673.222 kb on - strand at 4673.319 kb on + strand, within LU632_RS24500 at 4673.360 kb on - strand, within LU632_RS24500 at 4673.360 kb on - strand, within LU632_RS24500 at 4673.362 kb on - strand, within LU632_RS24500 at 4673.390 kb on - strand, within LU632_RS24500
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,671,977 + -0.7 4,672,078 - +1.1 4,672,130 + +0.5 4,672,131 - -0.8 4,672,158 - -0.3 4,672,162 - -1.4 4,672,168 - +2.4 4,672,195 + -0.5 4,672,196 - +0.3 4,672,237 + LU632_RS24490 0.10 -1.2 4,672,300 + LU632_RS24490 0.42 +0.8 4,672,361 - LU632_RS24490 0.73 -2.7 4,672,394 - -1.9 4,672,397 - -0.3 4,672,471 + LU632_RS24495 0.11 -0.8 4,672,471 + LU632_RS24495 0.11 -0.2 4,672,472 - LU632_RS24495 0.11 +0.2 4,672,476 + LU632_RS24495 0.12 -0.4 4,672,476 + LU632_RS24495 0.12 +0.8 4,672,641 + LU632_RS24495 0.36 +0.4 4,672,641 + LU632_RS24495 0.36 -0.2 4,672,642 - LU632_RS24495 0.36 +0.3 4,672,642 - LU632_RS24495 0.36 -0.5 4,672,642 - LU632_RS24495 0.36 -0.2 4,672,643 + LU632_RS24495 0.36 +0.3 4,672,644 - LU632_RS24495 0.36 -0.1 4,672,667 + LU632_RS24495 0.39 -1.4 4,672,668 - LU632_RS24495 0.40 -0.1 4,672,673 + LU632_RS24495 0.40 -0.1 4,672,836 + LU632_RS24495 0.64 +0.1 4,672,837 - LU632_RS24495 0.64 +0.2 4,672,837 - LU632_RS24495 0.64 -0.2 4,672,886 - LU632_RS24495 0.71 -0.6 4,672,890 - LU632_RS24495 0.71 -0.9 4,672,925 - LU632_RS24495 0.76 -0.6 4,673,028 - +1.2 4,673,071 + +0.3 4,673,193 + +0.3 4,673,218 - +1.2 4,673,218 - +0.8 4,673,218 - +0.6 4,673,221 + -0.2 4,673,221 - +0.2 4,673,222 - -0.0 4,673,319 + LU632_RS24500 0.15 -0.8 4,673,360 - LU632_RS24500 0.20 -1.5 4,673,360 - LU632_RS24500 0.20 +0.3 4,673,362 - LU632_RS24500 0.20 -0.5 4,673,390 - LU632_RS24500 0.23 -0.6
Or see this region's nucleotide sequence