Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23390 and LU632_RS23395 are separated by 136 nucleotides LU632_RS23395 and LU632_RS23400 are separated by 84 nucleotides LU632_RS23400 and LU632_RS23405 are separated by 488 nucleotides
LU632_RS23390: LU632_RS23390 - IS256 family transposase, at 4,457,810 to 4,458,762
_RS23390
LU632_RS23395: LU632_RS23395 - IS91 family transposase, at 4,458,899 to 4,460,122
_RS23395
LU632_RS23400: LU632_RS23400 - transposase, at 4,460,207 to 4,460,473
_RS23400
LU632_RS23405: LU632_RS23405 - IS6 family transposase, at 4,460,962 to 4,461,658
_RS23405
Position (kb) 4458
4459
4460
4461 Strain fitness (log2 ratio) -1
0
1 at 4458.639 kb on - strand, within LU632_RS23390 at 4458.639 kb on - strand, within LU632_RS23390 at 4458.639 kb on - strand, within LU632_RS23390 at 4458.639 kb on - strand, within LU632_RS23390 at 4458.639 kb on - strand, within LU632_RS23390 at 4460.692 kb on - strand at 4460.722 kb on - strand at 4460.793 kb on - strand at 4460.824 kb on - strand at 4460.824 kb on - strand at 4460.864 kb on - strand at 4460.866 kb on - strand at 4460.866 kb on - strand at 4460.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,458,639 - LU632_RS23390 0.87 -0.2 4,458,639 - LU632_RS23390 0.87 -0.3 4,458,639 - LU632_RS23390 0.87 +0.7 4,458,639 - LU632_RS23390 0.87 +0.3 4,458,639 - LU632_RS23390 0.87 +1.3 4,460,692 - -0.7 4,460,722 - +0.9 4,460,793 - +0.5 4,460,824 - -0.8 4,460,824 - +0.6 4,460,864 - -0.0 4,460,866 - +1.2 4,460,866 - +0.2 4,460,871 + -1.0
Or see this region's nucleotide sequence