Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23320 and LU632_RS23325 are separated by 600 nucleotides LU632_RS23325 and LU632_RS23330 overlap by 7 nucleotides LU632_RS23330 and LU632_RS23335 are separated by 9 nucleotides LU632_RS23335 and LU632_RS23340 overlap by 8 nucleotides LU632_RS23340 and sbmA are separated by 58 nucleotides
LU632_RS23320: LU632_RS23320 - methyl-accepting chemotaxis protein, at 4,443,421 to 4,444,280
_RS23320
LU632_RS23325: LU632_RS23325 - hypothetical protein, at 4,444,881 to 4,445,069
_RS23325
LU632_RS23330: LU632_RS23330 - dihydroxyacetone kinase subunit DhaK, at 4,445,063 to 4,445,956
_RS23330
LU632_RS23335: LU632_RS23335 - hypothetical protein, at 4,445,966 to 4,446,136
_RS23335
LU632_RS23340: LU632_RS23340 - dihydroxyacetone kinase subunit L, at 4,446,129 to 4,446,281
_RS23340
LU632_RS23345: sbmA - peptide antibiotic transporter SbmA, at 4,446,340 to 4,447,539
sbmA
Position (kb) 4445
4446 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4444.159 kb on + strand, within LU632_RS23320 at 4444.160 kb on - strand, within LU632_RS23320 at 4444.160 kb on - strand, within LU632_RS23320 at 4444.191 kb on - strand, within LU632_RS23320 at 4444.215 kb on + strand at 4444.215 kb on + strand at 4444.215 kb on + strand at 4444.215 kb on + strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.216 kb on - strand at 4444.220 kb on - strand at 4444.263 kb on - strand at 4444.266 kb on - strand at 4444.806 kb on + strand at 4444.928 kb on + strand, within LU632_RS23325 at 4444.931 kb on + strand, within LU632_RS23325 at 4444.931 kb on + strand, within LU632_RS23325 at 4444.932 kb on - strand, within LU632_RS23325 at 4444.964 kb on + strand, within LU632_RS23325 at 4444.965 kb on - strand, within LU632_RS23325 at 4444.988 kb on + strand, within LU632_RS23325 at 4445.135 kb on - strand at 4445.353 kb on - strand, within LU632_RS23330 at 4445.658 kb on + strand, within LU632_RS23330 at 4445.658 kb on + strand, within LU632_RS23330 at 4445.685 kb on + strand, within LU632_RS23330 at 4445.685 kb on + strand, within LU632_RS23330 at 4445.752 kb on - strand, within LU632_RS23330 at 4445.955 kb on - strand at 4445.955 kb on - strand at 4446.027 kb on + strand, within LU632_RS23335 at 4446.115 kb on + strand, within LU632_RS23335 at 4446.116 kb on - strand, within LU632_RS23335 at 4446.128 kb on + strand at 4446.128 kb on + strand at 4446.203 kb on + strand, within LU632_RS23340 at 4446.279 kb on + strand at 4446.280 kb on - strand at 4446.377 kb on - strand at 4446.384 kb on + strand at 4446.386 kb on + strand at 4446.431 kb on + strand at 4446.465 kb on + strand, within sbmA at 4446.507 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.582 kb on - strand, within sbmA at 4446.582 kb on - strand, within sbmA at 4446.903 kb on + strand, within sbmA at 4446.907 kb on - strand, within sbmA at 4446.907 kb on - strand, within sbmA
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,444,159 + LU632_RS23320 0.86 +0.2 4,444,160 - LU632_RS23320 0.86 -1.7 4,444,160 - LU632_RS23320 0.86 +0.0 4,444,191 - LU632_RS23320 0.90 -2.9 4,444,215 + -0.1 4,444,215 + -0.5 4,444,215 + -0.2 4,444,215 + +0.1 4,444,216 - -1.0 4,444,216 - +0.7 4,444,216 - +0.2 4,444,216 - -0.5 4,444,216 - -0.3 4,444,216 - -1.7 4,444,216 - -0.1 4,444,216 - +0.2 4,444,216 - -1.0 4,444,216 - -0.7 4,444,216 - +0.9 4,444,216 - -0.0 4,444,220 - -0.3 4,444,263 - +1.2 4,444,266 - -0.2 4,444,806 + -0.9 4,444,928 + LU632_RS23325 0.25 +0.3 4,444,931 + LU632_RS23325 0.26 +0.1 4,444,931 + LU632_RS23325 0.26 +0.2 4,444,932 - LU632_RS23325 0.27 -0.2 4,444,964 + LU632_RS23325 0.44 +0.3 4,444,965 - LU632_RS23325 0.44 -0.3 4,444,988 + LU632_RS23325 0.57 +0.2 4,445,135 - -1.0 4,445,353 - LU632_RS23330 0.32 -1.4 4,445,658 + LU632_RS23330 0.67 -2.0 4,445,658 + LU632_RS23330 0.67 -2.3 4,445,685 + LU632_RS23330 0.70 -0.2 4,445,685 + LU632_RS23330 0.70 -0.5 4,445,752 - LU632_RS23330 0.77 -1.5 4,445,955 - +0.4 4,445,955 - +0.5 4,446,027 + LU632_RS23335 0.36 +0.1 4,446,115 + LU632_RS23335 0.87 -0.0 4,446,116 - LU632_RS23335 0.88 +0.6 4,446,128 + +1.2 4,446,128 + +0.4 4,446,203 + LU632_RS23340 0.48 +0.6 4,446,279 + +0.0 4,446,280 - +0.6 4,446,377 - +0.2 4,446,384 + -0.6 4,446,386 + -0.7 4,446,431 + -0.1 4,446,465 + sbmA LU632_RS23345 0.10 -1.2 4,446,507 + sbmA LU632_RS23345 0.14 -0.2 4,446,581 + sbmA LU632_RS23345 0.20 -0.2 4,446,581 + sbmA LU632_RS23345 0.20 +0.7 4,446,581 + sbmA LU632_RS23345 0.20 +0.2 4,446,581 + sbmA LU632_RS23345 0.20 -0.4 4,446,582 - sbmA LU632_RS23345 0.20 +0.0 4,446,582 - sbmA LU632_RS23345 0.20 -0.4 4,446,903 + sbmA LU632_RS23345 0.47 +0.3 4,446,907 - sbmA LU632_RS23345 0.47 +1.0 4,446,907 - sbmA LU632_RS23345 0.47 -0.2
Or see this region's nucleotide sequence