Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23185 and LU632_RS23190 are separated by 431 nucleotides LU632_RS23190 and LU632_RS23195 are separated by 155 nucleotides LU632_RS23195 and LU632_RS23200 are separated by 95 nucleotides LU632_RS23200 and LU632_RS23205 overlap by 8 nucleotides
LU632_RS23185: LU632_RS23185 - IS481 family transposase, at 4,417,999 to 4,419,039
_RS23185
LU632_RS23190: LU632_RS23190 - IS6 family transposase, at 4,419,471 to 4,420,118
_RS23190
LU632_RS23195: LU632_RS23195 - amidohydrolase, at 4,420,274 to 4,420,471
_RS23195
LU632_RS23200: LU632_RS23200 - hypothetical protein, at 4,420,567 to 4,421,055
_RS23200
LU632_RS23205: LU632_RS23205 - alpha/beta hydrolase, at 4,421,048 to 4,421,200
_RS23205
Position (kb) 4419
4420
4421 Strain fitness (log2 ratio) -1
0
1
2 at 4419.305 kb on + strand at 4419.312 kb on + strand at 4419.312 kb on + strand at 4419.326 kb on - strand at 4419.397 kb on + strand at 4419.397 kb on + strand at 4419.397 kb on + strand at 4419.672 kb on + strand, within LU632_RS23190 at 4419.673 kb on - strand, within LU632_RS23190 at 4419.673 kb on - strand, within LU632_RS23190 at 4419.698 kb on - strand, within LU632_RS23190 at 4419.848 kb on + strand, within LU632_RS23190 at 4419.919 kb on - strand, within LU632_RS23190 at 4419.923 kb on + strand, within LU632_RS23190 at 4420.057 kb on - strand at 4420.128 kb on - strand at 4420.258 kb on - strand at 4420.273 kb on + strand at 4420.416 kb on + strand, within LU632_RS23195 at 4420.488 kb on - strand at 4420.531 kb on + strand at 4420.629 kb on + strand, within LU632_RS23200 at 4420.630 kb on - strand, within LU632_RS23200 at 4420.660 kb on + strand, within LU632_RS23200 at 4420.820 kb on + strand, within LU632_RS23200 at 4420.951 kb on + strand, within LU632_RS23200 at 4420.951 kb on + strand, within LU632_RS23200 at 4421.027 kb on - strand at 4421.073 kb on + strand, within LU632_RS23205 at 4421.073 kb on + strand, within LU632_RS23205 at 4421.074 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,419,305 + -0.6 4,419,312 + +0.1 4,419,312 + -0.0 4,419,326 - -0.8 4,419,397 + -0.2 4,419,397 + -1.7 4,419,397 + +0.2 4,419,672 + LU632_RS23190 0.31 -0.3 4,419,673 - LU632_RS23190 0.31 +0.8 4,419,673 - LU632_RS23190 0.31 +0.1 4,419,698 - LU632_RS23190 0.35 +0.2 4,419,848 + LU632_RS23190 0.58 -0.4 4,419,919 - LU632_RS23190 0.69 -0.7 4,419,923 + LU632_RS23190 0.70 +1.8 4,420,057 - -0.2 4,420,128 - +0.2 4,420,258 - +0.1 4,420,273 + -0.4 4,420,416 + LU632_RS23195 0.72 +0.1 4,420,488 - -0.4 4,420,531 + -0.8 4,420,629 + LU632_RS23200 0.13 +1.3 4,420,630 - LU632_RS23200 0.13 +0.0 4,420,660 + LU632_RS23200 0.19 +1.2 4,420,820 + LU632_RS23200 0.52 +0.2 4,420,951 + LU632_RS23200 0.79 +0.4 4,420,951 + LU632_RS23200 0.79 +0.8 4,421,027 - -0.4 4,421,073 + LU632_RS23205 0.16 +0.1 4,421,073 + LU632_RS23205 0.16 +0.6 4,421,074 - LU632_RS23205 0.17 -0.9 4,421,079 - LU632_RS23205 0.20 -0.4 4,421,079 - LU632_RS23205 0.20 -0.2 4,421,079 - LU632_RS23205 0.20 +0.6
Or see this region's nucleotide sequence