Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rplD and rplC are separated by 10 nucleotides rplC and rpsJ are separated by 32 nucleotides rpsJ and LU632_RS22665 are separated by 266 nucleotides LU632_RS22665 and LU632_RS22670 overlap by 4 nucleotides
LU632_RS22650: rplD - 50S ribosomal protein L4, at 4,315,094 to 4,315,699
rplD
LU632_RS22655: rplC - 50S ribosomal protein L3, at 4,315,710 to 4,316,339
rplC
LU632_RS22660: rpsJ - 30S ribosomal protein S10, at 4,316,372 to 4,316,683
rpsJ
LU632_RS22665: LU632_RS22665 - hypothetical protein, at 4,316,950 to 4,317,363
_RS22665
LU632_RS22670: LU632_RS22670 - hypothetical protein, at 4,317,360 to 4,317,962
_RS22670
Position (kb) 4316
4317 Strain fitness (log2 ratio) -1
0
1 at 4316.944 kb on - strand at 4317.003 kb on + strand, within LU632_RS22665 at 4317.014 kb on + strand, within LU632_RS22665 at 4317.066 kb on + strand, within LU632_RS22665 at 4317.241 kb on + strand, within LU632_RS22665 at 4317.241 kb on + strand, within LU632_RS22665 at 4317.241 kb on + strand, within LU632_RS22665 at 4317.242 kb on - strand, within LU632_RS22665 at 4317.242 kb on - strand, within LU632_RS22665 at 4317.292 kb on - strand, within LU632_RS22665 at 4317.293 kb on + strand, within LU632_RS22665 at 4317.369 kb on - strand at 4317.370 kb on + strand at 4317.370 kb on + strand at 4317.443 kb on + strand, within LU632_RS22670 at 4317.525 kb on + strand, within LU632_RS22670 at 4317.526 kb on - strand, within LU632_RS22670 at 4317.534 kb on + strand, within LU632_RS22670 at 4317.609 kb on + strand, within LU632_RS22670 at 4317.622 kb on + strand, within LU632_RS22670 at 4317.671 kb on + strand, within LU632_RS22670
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,316,944 - -0.6 4,317,003 + LU632_RS22665 0.13 -0.3 4,317,014 + LU632_RS22665 0.15 -1.6 4,317,066 + LU632_RS22665 0.28 +0.5 4,317,241 + LU632_RS22665 0.70 -0.1 4,317,241 + LU632_RS22665 0.70 -1.1 4,317,241 + LU632_RS22665 0.70 -0.6 4,317,242 - LU632_RS22665 0.71 +0.3 4,317,242 - LU632_RS22665 0.71 +0.2 4,317,292 - LU632_RS22665 0.83 -0.6 4,317,293 + LU632_RS22665 0.83 +0.7 4,317,369 - -0.6 4,317,370 + +1.0 4,317,370 + +0.5 4,317,443 + LU632_RS22670 0.14 -0.8 4,317,525 + LU632_RS22670 0.27 -0.7 4,317,526 - LU632_RS22670 0.28 -1.2 4,317,534 + LU632_RS22670 0.29 +0.2 4,317,609 + LU632_RS22670 0.41 +0.1 4,317,622 + LU632_RS22670 0.43 -0.2 4,317,671 + LU632_RS22670 0.52 +0.2
Or see this region's nucleotide sequence