Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20750

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS20745 and LU632_RS20750 are separated by 146 nucleotidesLU632_RS20750 and LU632_RS20755 are separated by 71 nucleotidesLU632_RS20755 and LU632_RS20760 are separated by 173 nucleotides LU632_RS20745: LU632_RS20745 - hypothetical protein, at 3,959,027 to 3,961,363 _RS20745 LU632_RS20750: LU632_RS20750 - hypothetical protein, at 3,961,510 to 3,962,109 _RS20750 LU632_RS20755: LU632_RS20755 - hypothetical protein, at 3,962,181 to 3,962,885 _RS20755 LU632_RS20760: LU632_RS20760 - hypothetical protein, at 3,963,059 to 3,963,442 _RS20760 Position (kb) 3961 3962 3963Strain fitness (log2 ratio) -1 0 1at 3960.825 kb on - strand, within LU632_RS20745at 3961.025 kb on - strand, within LU632_RS20745at 3961.861 kb on - strand, within LU632_RS20750at 3962.588 kb on - strand, within LU632_RS20755at 3963.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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3,960,825 - LU632_RS20745 0.77 +0.4
3,961,025 - LU632_RS20745 0.85 -0.6
3,961,861 - LU632_RS20750 0.58 -0.8
3,962,588 - LU632_RS20755 0.58 +0.7
3,963,040 + -0.3

Or see this region's nucleotide sequence