Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20505

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS20500 and LU632_RS20505 are separated by 706 nucleotidesLU632_RS20505 and LU632_RS20510 are separated by 885 nucleotides LU632_RS20500: LU632_RS20500 - sigma-54 dependent transcriptional regulator, at 3,900,764 to 3,901,801 _RS20500 LU632_RS20505: LU632_RS20505 - IS256 family transposase, at 3,902,508 to 3,903,695 _RS20505 LU632_RS20510: LU632_RS20510 - hypothetical protein, at 3,904,581 to 3,905,570 _RS20510 Position (kb) 3902 3903 3904Strain fitness (log2 ratio) -1 0 1at 3902.908 kb on - strand, within LU632_RS20505at 3902.908 kb on - strand, within LU632_RS20505at 3903.759 kb on + strandat 3903.824 kb on + strandat 3903.900 kb on - strandat 3904.042 kb on + strandat 3904.042 kb on + strandat 3904.043 kb on - strandat 3904.180 kb on - strandat 3904.305 kb on + strandat 3904.306 kb on - strandat 3904.342 kb on - strandat 3904.468 kb on + strandat 3904.472 kb on + strandat 3904.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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3,902,908 - LU632_RS20505 0.34 -0.5
3,902,908 - LU632_RS20505 0.34 -0.8
3,903,759 + +0.2
3,903,824 + -0.5
3,903,900 - -0.1
3,904,042 + +0.6
3,904,042 + -1.3
3,904,043 - -0.4
3,904,180 - +1.2
3,904,305 + +0.9
3,904,306 - +0.1
3,904,342 - -0.6
3,904,468 + +0.4
3,904,472 + -0.2
3,904,502 - -0.6

Or see this region's nucleotide sequence