Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metN and LU632_RS19825 overlap by 8 nucleotides LU632_RS19825 and LU632_RS19830 are separated by 30 nucleotides LU632_RS19830 and rcsF are separated by 141 nucleotides rcsF and tsaA overlap by 4 nucleotides
LU632_RS19820: metN - methionine ABC transporter ATP-binding protein MetN, at 3,766,999 to 3,768,030
metN
LU632_RS19825: LU632_RS19825 - methionine ABC transporter permease MetI, at 3,768,023 to 3,768,676
_RS19825
LU632_RS19830: LU632_RS19830 - MetQ/NlpA family lipoprotein, at 3,768,707 to 3,769,522
_RS19830
LU632_RS19835: rcsF - Rcs stress response system protein RcsF, at 3,769,664 to 3,770,068
rcsF
LU632_RS19840: tsaA - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 3,770,065 to 3,770,772
tsaA
Position (kb) 3768
3769
3770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3767.755 kb on + strand, within metN at 3767.805 kb on - strand, within metN at 3767.873 kb on + strand, within metN at 3767.873 kb on + strand, within metN at 3767.887 kb on - strand, within metN at 3767.887 kb on - strand, within metN at 3767.887 kb on - strand, within metN at 3767.889 kb on + strand, within metN at 3767.889 kb on + strand, within metN at 3767.890 kb on - strand, within metN at 3768.015 kb on - strand at 3768.022 kb on + strand at 3768.040 kb on + strand at 3768.137 kb on + strand, within LU632_RS19825 at 3768.138 kb on - strand, within LU632_RS19825 at 3768.205 kb on + strand, within LU632_RS19825 at 3768.227 kb on - strand, within LU632_RS19825 at 3768.234 kb on + strand, within LU632_RS19825 at 3768.234 kb on + strand, within LU632_RS19825 at 3768.289 kb on - strand, within LU632_RS19825 at 3768.303 kb on + strand, within LU632_RS19825 at 3768.332 kb on - strand, within LU632_RS19825 at 3768.352 kb on + strand, within LU632_RS19825 at 3768.357 kb on + strand, within LU632_RS19825 at 3768.379 kb on - strand, within LU632_RS19825 at 3768.553 kb on - strand, within LU632_RS19825 at 3768.553 kb on - strand, within LU632_RS19825 at 3768.558 kb on - strand, within LU632_RS19825 at 3768.563 kb on + strand, within LU632_RS19825 at 3768.564 kb on - strand, within LU632_RS19825 at 3768.597 kb on + strand, within LU632_RS19825 at 3768.600 kb on + strand, within LU632_RS19825 at 3768.600 kb on + strand, within LU632_RS19825 at 3768.600 kb on + strand, within LU632_RS19825 at 3768.627 kb on + strand at 3768.628 kb on - strand at 3768.670 kb on + strand at 3768.674 kb on + strand at 3768.685 kb on - strand at 3768.685 kb on - strand at 3768.706 kb on + strand at 3768.754 kb on + strand at 3768.769 kb on - strand at 3768.803 kb on - strand, within LU632_RS19830 at 3768.804 kb on + strand, within LU632_RS19830 at 3768.849 kb on + strand, within LU632_RS19830 at 3769.008 kb on - strand, within LU632_RS19830 at 3769.008 kb on - strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.010 kb on - strand, within LU632_RS19830 at 3769.309 kb on + strand, within LU632_RS19830 at 3769.309 kb on + strand, within LU632_RS19830 at 3769.309 kb on + strand, within LU632_RS19830 at 3769.312 kb on + strand, within LU632_RS19830 at 3769.312 kb on + strand, within LU632_RS19830 at 3769.315 kb on + strand, within LU632_RS19830 at 3769.315 kb on + strand, within LU632_RS19830 at 3769.315 kb on + strand, within LU632_RS19830 at 3769.316 kb on - strand, within LU632_RS19830 at 3769.316 kb on - strand, within LU632_RS19830 at 3769.319 kb on + strand, within LU632_RS19830 at 3769.320 kb on - strand, within LU632_RS19830 at 3769.320 kb on - strand, within LU632_RS19830 at 3769.414 kb on + strand, within LU632_RS19830 at 3769.531 kb on + strand at 3769.603 kb on + strand at 3769.636 kb on + strand at 3769.674 kb on + strand at 3769.723 kb on + strand, within rcsF at 3769.731 kb on - strand, within rcsF at 3769.732 kb on + strand, within rcsF at 3769.732 kb on + strand, within rcsF at 3769.784 kb on - strand, within rcsF at 3769.921 kb on + strand, within rcsF at 3769.958 kb on - strand, within rcsF at 3769.958 kb on - strand, within rcsF at 3769.995 kb on + strand, within rcsF at 3769.996 kb on - strand, within rcsF at 3770.148 kb on + strand, within tsaA at 3770.177 kb on + strand, within tsaA at 3770.177 kb on + strand, within tsaA at 3770.188 kb on + strand, within tsaA at 3770.188 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.263 kb on - strand, within tsaA at 3770.322 kb on - strand, within tsaA at 3770.469 kb on + strand, within tsaA at 3770.476 kb on + strand, within tsaA
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 3,767,755 + metN LU632_RS19820 0.73 -0.1 3,767,805 - metN LU632_RS19820 0.78 +0.6 3,767,873 + metN LU632_RS19820 0.85 -0.9 3,767,873 + metN LU632_RS19820 0.85 -1.9 3,767,887 - metN LU632_RS19820 0.86 -2.5 3,767,887 - metN LU632_RS19820 0.86 -1.4 3,767,887 - metN LU632_RS19820 0.86 +0.1 3,767,889 + metN LU632_RS19820 0.86 +1.6 3,767,889 + metN LU632_RS19820 0.86 -0.7 3,767,890 - metN LU632_RS19820 0.86 -2.1 3,768,015 - -2.2 3,768,022 + +1.1 3,768,040 + -1.5 3,768,137 + LU632_RS19825 0.17 -1.6 3,768,138 - LU632_RS19825 0.18 -1.0 3,768,205 + LU632_RS19825 0.28 -1.3 3,768,227 - LU632_RS19825 0.31 -1.4 3,768,234 + LU632_RS19825 0.32 +0.9 3,768,234 + LU632_RS19825 0.32 -1.8 3,768,289 - LU632_RS19825 0.41 -1.7 3,768,303 + LU632_RS19825 0.43 -2.1 3,768,332 - LU632_RS19825 0.47 -0.9 3,768,352 + LU632_RS19825 0.50 -2.2 3,768,357 + LU632_RS19825 0.51 -1.9 3,768,379 - LU632_RS19825 0.54 -1.2 3,768,553 - LU632_RS19825 0.81 +0.1 3,768,553 - LU632_RS19825 0.81 -0.9 3,768,558 - LU632_RS19825 0.82 -1.2 3,768,563 + LU632_RS19825 0.83 -2.0 3,768,564 - LU632_RS19825 0.83 -0.9 3,768,597 + LU632_RS19825 0.88 +0.1 3,768,600 + LU632_RS19825 0.88 -1.9 3,768,600 + LU632_RS19825 0.88 -1.9 3,768,600 + LU632_RS19825 0.88 -2.3 3,768,627 + +0.1 3,768,628 - -0.9 3,768,670 + -1.5 3,768,674 + +0.4 3,768,685 - -1.4 3,768,685 - -2.8 3,768,706 + -0.9 3,768,754 + -3.3 3,768,769 - -1.9 3,768,803 - LU632_RS19830 0.12 -0.9 3,768,804 + LU632_RS19830 0.12 -1.5 3,768,849 + LU632_RS19830 0.17 -1.2 3,769,008 - LU632_RS19830 0.37 -1.9 3,769,008 - LU632_RS19830 0.37 -1.0 3,769,009 + LU632_RS19830 0.37 -1.9 3,769,009 + LU632_RS19830 0.37 -1.4 3,769,009 + LU632_RS19830 0.37 -0.9 3,769,009 + LU632_RS19830 0.37 -1.4 3,769,009 + LU632_RS19830 0.37 -1.0 3,769,009 + LU632_RS19830 0.37 -1.8 3,769,010 - LU632_RS19830 0.37 +0.1 3,769,309 + LU632_RS19830 0.74 -2.4 3,769,309 + LU632_RS19830 0.74 -0.3 3,769,309 + LU632_RS19830 0.74 +0.1 3,769,312 + LU632_RS19830 0.74 -2.1 3,769,312 + LU632_RS19830 0.74 -2.1 3,769,315 + LU632_RS19830 0.75 +0.6 3,769,315 + LU632_RS19830 0.75 -0.8 3,769,315 + LU632_RS19830 0.75 -2.8 3,769,316 - LU632_RS19830 0.75 -2.0 3,769,316 - LU632_RS19830 0.75 -1.6 3,769,319 + LU632_RS19830 0.75 -1.4 3,769,320 - LU632_RS19830 0.75 +1.6 3,769,320 - LU632_RS19830 0.75 -1.5 3,769,414 + LU632_RS19830 0.87 -2.8 3,769,531 + +0.1 3,769,603 + +0.1 3,769,636 + +0.1 3,769,674 + +0.3 3,769,723 + rcsF LU632_RS19835 0.15 +0.4 3,769,731 - rcsF LU632_RS19835 0.17 -0.0 3,769,732 + rcsF LU632_RS19835 0.17 +0.1 3,769,732 + rcsF LU632_RS19835 0.17 +0.7 3,769,784 - rcsF LU632_RS19835 0.30 -0.5 3,769,921 + rcsF LU632_RS19835 0.63 +0.2 3,769,958 - rcsF LU632_RS19835 0.73 +0.7 3,769,958 - rcsF LU632_RS19835 0.73 -0.5 3,769,995 + rcsF LU632_RS19835 0.82 +1.1 3,769,996 - rcsF LU632_RS19835 0.82 +0.2 3,770,148 + tsaA LU632_RS19840 0.12 +0.7 3,770,177 + tsaA LU632_RS19840 0.16 +0.4 3,770,177 + tsaA LU632_RS19840 0.16 +0.1 3,770,188 + tsaA LU632_RS19840 0.17 +0.9 3,770,188 + tsaA LU632_RS19840 0.17 -0.5 3,770,232 + tsaA LU632_RS19840 0.24 +0.3 3,770,232 + tsaA LU632_RS19840 0.24 -0.7 3,770,232 + tsaA LU632_RS19840 0.24 +0.2 3,770,232 + tsaA LU632_RS19840 0.24 -0.1 3,770,232 + tsaA LU632_RS19840 0.24 -0.4 3,770,232 + tsaA LU632_RS19840 0.24 -0.4 3,770,232 + tsaA LU632_RS19840 0.24 +0.2 3,770,232 + tsaA LU632_RS19840 0.24 +0.3 3,770,233 - tsaA LU632_RS19840 0.24 +0.2 3,770,233 - tsaA LU632_RS19840 0.24 -2.4 3,770,233 - tsaA LU632_RS19840 0.24 -0.4 3,770,233 - tsaA LU632_RS19840 0.24 +0.6 3,770,233 - tsaA LU632_RS19840 0.24 -0.4 3,770,234 + tsaA LU632_RS19840 0.24 -0.9 3,770,234 + tsaA LU632_RS19840 0.24 -0.4 3,770,234 + tsaA LU632_RS19840 0.24 -0.2 3,770,234 + tsaA LU632_RS19840 0.24 -0.9 3,770,234 + tsaA LU632_RS19840 0.24 -0.2 3,770,234 + tsaA LU632_RS19840 0.24 +0.6 3,770,234 + tsaA LU632_RS19840 0.24 +0.1 3,770,235 - tsaA LU632_RS19840 0.24 -0.3 3,770,235 - tsaA LU632_RS19840 0.24 +0.4 3,770,235 - tsaA LU632_RS19840 0.24 +0.6 3,770,235 - tsaA LU632_RS19840 0.24 +2.2 3,770,235 - tsaA LU632_RS19840 0.24 -0.7 3,770,235 - tsaA LU632_RS19840 0.24 -0.4 3,770,235 - tsaA LU632_RS19840 0.24 +0.3 3,770,235 - tsaA LU632_RS19840 0.24 -0.1 3,770,263 - tsaA LU632_RS19840 0.28 -0.2 3,770,322 - tsaA LU632_RS19840 0.36 +0.4 3,770,469 + tsaA LU632_RS19840 0.57 +0.3 3,770,476 + tsaA LU632_RS19840 0.58 +0.4
Or see this region's nucleotide sequence