Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS19745 and LU632_RS19750 are separated by 76 nucleotides LU632_RS19750 and LU632_RS19755 are separated by 131 nucleotides LU632_RS19755 and LU632_RS19760 are separated by 8 nucleotides
LU632_RS19745: LU632_RS19745 - glutathione S-transferase N-terminal domain-containing protein, at 3,751,353 to 3,751,715
_RS19745
LU632_RS19750: LU632_RS19750 - PhzF family phenazine biosynthesis protein, at 3,751,792 to 3,752,297
_RS19750
LU632_RS19755: LU632_RS19755 - hypothetical protein, at 3,752,429 to 3,752,607
_RS19755
LU632_RS19760: LU632_RS19760 - IS91 family transposase, at 3,752,616 to 3,753,815
_RS19760
Position (kb)
3752
3753 Strain fitness (log2 ratio)
-1
0
1 at 3751.502 kb on - strand, within LU632_RS19745 at 3751.528 kb on - strand, within LU632_RS19745 at 3751.583 kb on + strand, within LU632_RS19745 at 3751.637 kb on - strand, within LU632_RS19745 at 3751.637 kb on - strand, within LU632_RS19745 at 3751.640 kb on + strand, within LU632_RS19745 at 3751.641 kb on - strand, within LU632_RS19745 at 3751.705 kb on - strand at 3751.716 kb on - strand at 3751.750 kb on + strand at 3751.751 kb on - strand at 3751.754 kb on + strand at 3751.754 kb on + strand at 3751.754 kb on + strand at 3751.755 kb on - strand at 3751.802 kb on + strand at 3751.821 kb on - strand at 3751.886 kb on + strand, within LU632_RS19750 at 3751.887 kb on - strand, within LU632_RS19750 at 3752.183 kb on + strand, within LU632_RS19750 at 3752.184 kb on - strand, within LU632_RS19750
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 3,751,502 - LU632_RS19745 0.41 -0.7 3,751,528 - LU632_RS19745 0.48 +0.5 3,751,583 + LU632_RS19745 0.63 +0.1 3,751,637 - LU632_RS19745 0.78 -0.7 3,751,637 - LU632_RS19745 0.78 +0.2 3,751,640 + LU632_RS19745 0.79 +0.2 3,751,641 - LU632_RS19745 0.79 +0.3 3,751,705 - +0.1 3,751,716 - +1.0 3,751,750 + -0.9 3,751,751 - -0.2 3,751,754 + -0.2 3,751,754 + -0.9 3,751,754 + +1.1 3,751,755 - -0.2 3,751,802 + -0.4 3,751,821 - +0.2 3,751,886 + LU632_RS19750 0.19 -0.2 3,751,887 - LU632_RS19750 0.19 -0.6 3,752,183 + LU632_RS19750 0.77 -1.1 3,752,184 - LU632_RS19750 0.77 -0.2
Or see this region's nucleotide sequence