Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mqo and LU632_RS19740 are separated by 95 nucleotides LU632_RS19740 and LU632_RS19745 are separated by 148 nucleotides LU632_RS19745 and LU632_RS19750 are separated by 76 nucleotides LU632_RS19750 and LU632_RS19755 are separated by 131 nucleotides LU632_RS19755 and LU632_RS19760 are separated by 8 nucleotides
LU632_RS19735: mqo - malate dehydrogenase (quinone), at 3,749,020 to 3,750,609
mqo
LU632_RS19740: LU632_RS19740 - LysE family translocator, at 3,750,705 to 3,751,204
_RS19740
LU632_RS19745: LU632_RS19745 - glutathione S-transferase N-terminal domain-containing protein, at 3,751,353 to 3,751,715
_RS19745
LU632_RS19750: LU632_RS19750 - PhzF family phenazine biosynthesis protein, at 3,751,792 to 3,752,297
_RS19750
LU632_RS19755: LU632_RS19755 - hypothetical protein, at 3,752,429 to 3,752,607
_RS19755
LU632_RS19760: LU632_RS19760 - IS91 family transposase, at 3,752,616 to 3,753,815
_RS19760
Position (kb)
3751
3752 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3750.400 kb on - strand, within mqo at 3750.453 kb on + strand at 3750.457 kb on - strand at 3750.487 kb on - strand at 3750.547 kb on - strand at 3750.706 kb on + strand at 3750.706 kb on + strand at 3750.723 kb on - strand at 3750.747 kb on + strand at 3750.754 kb on - strand at 3750.754 kb on - strand at 3750.754 kb on - strand at 3750.791 kb on + strand, within LU632_RS19740 at 3750.791 kb on + strand, within LU632_RS19740 at 3750.792 kb on - strand, within LU632_RS19740 at 3750.792 kb on - strand, within LU632_RS19740 at 3750.794 kb on - strand, within LU632_RS19740 at 3750.817 kb on + strand, within LU632_RS19740 at 3750.857 kb on - strand, within LU632_RS19740 at 3750.859 kb on - strand, within LU632_RS19740 at 3750.859 kb on - strand, within LU632_RS19740 at 3750.881 kb on + strand, within LU632_RS19740 at 3750.881 kb on + strand, within LU632_RS19740 at 3751.001 kb on + strand, within LU632_RS19740 at 3751.002 kb on - strand, within LU632_RS19740 at 3751.005 kb on + strand, within LU632_RS19740 at 3751.005 kb on + strand, within LU632_RS19740 at 3751.009 kb on + strand, within LU632_RS19740 at 3751.009 kb on + strand, within LU632_RS19740 at 3751.153 kb on + strand, within LU632_RS19740 at 3751.196 kb on - strand at 3751.215 kb on + strand at 3751.215 kb on + strand at 3751.215 kb on + strand at 3751.216 kb on - strand at 3751.216 kb on - strand at 3751.216 kb on - strand at 3751.218 kb on + strand at 3751.219 kb on - strand at 3751.290 kb on + strand at 3751.291 kb on - strand at 3751.502 kb on - strand, within LU632_RS19745 at 3751.528 kb on - strand, within LU632_RS19745 at 3751.583 kb on + strand, within LU632_RS19745 at 3751.637 kb on - strand, within LU632_RS19745 at 3751.637 kb on - strand, within LU632_RS19745 at 3751.640 kb on + strand, within LU632_RS19745 at 3751.641 kb on - strand, within LU632_RS19745 at 3751.705 kb on - strand at 3751.716 kb on - strand at 3751.750 kb on + strand at 3751.751 kb on - strand at 3751.754 kb on + strand at 3751.754 kb on + strand at 3751.754 kb on + strand at 3751.755 kb on - strand at 3751.802 kb on + strand at 3751.821 kb on - strand at 3751.886 kb on + strand, within LU632_RS19750 at 3751.887 kb on - strand, within LU632_RS19750 at 3752.183 kb on + strand, within LU632_RS19750 at 3752.184 kb on - strand, within LU632_RS19750
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 3,750,400 - mqo LU632_RS19735 0.87 +1.0 3,750,453 + +0.2 3,750,457 - -1.4 3,750,487 - +0.8 3,750,547 - -0.0 3,750,706 + -0.1 3,750,706 + +0.0 3,750,723 - -1.0 3,750,747 + -1.0 3,750,754 - +0.1 3,750,754 - +0.8 3,750,754 - +1.0 3,750,791 + LU632_RS19740 0.17 +0.2 3,750,791 + LU632_RS19740 0.17 +0.3 3,750,792 - LU632_RS19740 0.17 -1.4 3,750,792 - LU632_RS19740 0.17 +0.6 3,750,794 - LU632_RS19740 0.18 -0.3 3,750,817 + LU632_RS19740 0.22 +2.1 3,750,857 - LU632_RS19740 0.30 +0.3 3,750,859 - LU632_RS19740 0.31 -0.5 3,750,859 - LU632_RS19740 0.31 +0.0 3,750,881 + LU632_RS19740 0.35 -0.9 3,750,881 + LU632_RS19740 0.35 +1.5 3,751,001 + LU632_RS19740 0.59 +0.3 3,751,002 - LU632_RS19740 0.59 -0.4 3,751,005 + LU632_RS19740 0.60 -1.9 3,751,005 + LU632_RS19740 0.60 +0.3 3,751,009 + LU632_RS19740 0.61 +0.2 3,751,009 + LU632_RS19740 0.61 -0.3 3,751,153 + LU632_RS19740 0.90 -0.4 3,751,196 - +0.5 3,751,215 + +0.6 3,751,215 + +1.7 3,751,215 + +0.2 3,751,216 - -0.8 3,751,216 - +0.0 3,751,216 - -0.2 3,751,218 + +1.3 3,751,219 - +0.3 3,751,290 + +0.2 3,751,291 - -1.2 3,751,502 - LU632_RS19745 0.41 -0.7 3,751,528 - LU632_RS19745 0.48 +0.5 3,751,583 + LU632_RS19745 0.63 +0.1 3,751,637 - LU632_RS19745 0.78 -0.7 3,751,637 - LU632_RS19745 0.78 +0.2 3,751,640 + LU632_RS19745 0.79 +0.2 3,751,641 - LU632_RS19745 0.79 +0.3 3,751,705 - +0.1 3,751,716 - +1.0 3,751,750 + -0.9 3,751,751 - -0.2 3,751,754 + -0.2 3,751,754 + -0.9 3,751,754 + +1.1 3,751,755 - -0.2 3,751,802 + -0.4 3,751,821 - +0.2 3,751,886 + LU632_RS19750 0.19 -0.2 3,751,887 - LU632_RS19750 0.19 -0.6 3,752,183 + LU632_RS19750 0.77 -1.1 3,752,184 - LU632_RS19750 0.77 -0.2
Or see this region's nucleotide sequence