Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS18550 and LU632_RS18555 are separated by 152 nucleotides LU632_RS18555 and LU632_RS18560 are separated by 2 nucleotides LU632_RS18560 and LU632_RS18565 are separated by 187 nucleotides LU632_RS18565 and LU632_RS18570 overlap by 4 nucleotides LU632_RS18570 and LU632_RS18575 are separated by 250 nucleotides
LU632_RS18550: LU632_RS18550 - IS3 family transposase, at 3,510,490 to 3,511,610
_RS18550
LU632_RS18555: LU632_RS18555 - hypothetical protein, at 3,511,763 to 3,512,050
_RS18555
LU632_RS18560: LU632_RS18560 - hypothetical protein, at 3,512,053 to 3,512,331
_RS18560
LU632_RS18565: LU632_RS18565 - IS1 family transposase, at 3,512,519 to 3,513,022
_RS18565
LU632_RS18570: LU632_RS18570 - hypothetical protein, at 3,513,019 to 3,513,036
_RS18570
LU632_RS18575: LU632_RS18575 - tyrosine-type recombinase/integrase, at 3,513,287 to 3,514,224
_RS18575
Position (kb) 3512
3513
3514 Strain fitness (log2 ratio) -2
-1
0
1 at 3511.694 kb on - strand at 3511.718 kb on - strand at 3511.728 kb on + strand at 3511.728 kb on + strand at 3511.729 kb on - strand at 3511.729 kb on - strand at 3511.768 kb on - strand at 3511.843 kb on - strand, within LU632_RS18555 at 3511.855 kb on - strand, within LU632_RS18555 at 3511.958 kb on - strand, within LU632_RS18555 at 3512.172 kb on + strand, within LU632_RS18560 at 3512.385 kb on + strand at 3512.386 kb on - strand at 3512.396 kb on + strand at 3512.484 kb on + strand at 3512.835 kb on + strand, within LU632_RS18565 at 3512.835 kb on + strand, within LU632_RS18565 at 3512.835 kb on + strand, within LU632_RS18565 at 3513.276 kb on - strand at 3513.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 3,511,694 - -0.8 3,511,718 - +1.3 3,511,728 + +0.6 3,511,728 + +0.7 3,511,729 - +0.1 3,511,729 - +0.6 3,511,768 - -2.1 3,511,843 - LU632_RS18555 0.28 -0.2 3,511,855 - LU632_RS18555 0.32 +0.6 3,511,958 - LU632_RS18555 0.68 +0.4 3,512,172 + LU632_RS18560 0.43 -0.0 3,512,385 + -0.4 3,512,386 - +0.7 3,512,396 + +1.6 3,512,484 + -0.7 3,512,835 + LU632_RS18565 0.63 +0.3 3,512,835 + LU632_RS18565 0.63 +0.5 3,512,835 + LU632_RS18565 0.63 +0.1 3,513,276 - +0.6 3,513,365 + +0.4
Or see this region's nucleotide sequence