Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS17420 and LU632_RS17425 are separated by 241 nucleotides LU632_RS17425 and LU632_RS17430 are separated by 67 nucleotides LU632_RS17430 and LU632_RS17435 are separated by 91 nucleotides
LU632_RS17420: LU632_RS17420 - phosphatidylinositol-specific phospholipase C domain-containing protein, at 3,274,040 to 3,274,858
_RS17420
LU632_RS17425: LU632_RS17425 - CyaA/EF/ExoY family adenylyl cyclase toxin, at 3,275,100 to 3,281,711
_RS17425
LU632_RS17430: LU632_RS17430 - recombinase family protein, at 3,281,779 to 3,282,420
_RS17430
LU632_RS17435: LU632_RS17435 - DUF2913 family protein, at 3,282,512 to 3,282,799
_RS17435
Position (kb) 3275
3276
3277
3278
3279
3280
3281
3282 Strain fitness (log2 ratio) -1
0
1
2 at 3274.260 kb on - strand, within LU632_RS17420 at 3275.481 kb on - strand at 3275.849 kb on + strand, within LU632_RS17425 at 3275.999 kb on + strand, within LU632_RS17425 at 3276.151 kb on + strand, within LU632_RS17425 at 3277.721 kb on - strand, within LU632_RS17425 at 3277.881 kb on - strand, within LU632_RS17425 at 3277.986 kb on + strand, within LU632_RS17425 at 3278.158 kb on - strand, within LU632_RS17425 at 3278.246 kb on + strand, within LU632_RS17425 at 3278.326 kb on + strand, within LU632_RS17425 at 3278.393 kb on + strand, within LU632_RS17425 at 3278.394 kb on - strand, within LU632_RS17425 at 3278.585 kb on + strand, within LU632_RS17425 at 3278.589 kb on + strand, within LU632_RS17425 at 3278.960 kb on + strand, within LU632_RS17425 at 3279.338 kb on - strand, within LU632_RS17425 at 3279.750 kb on - strand, within LU632_RS17425 at 3279.759 kb on - strand, within LU632_RS17425 at 3280.299 kb on + strand, within LU632_RS17425 at 3280.434 kb on - strand, within LU632_RS17425 at 3280.434 kb on - strand, within LU632_RS17425 at 3280.436 kb on - strand, within LU632_RS17425 at 3280.436 kb on - strand, within LU632_RS17425 at 3280.436 kb on - strand, within LU632_RS17425 at 3281.793 kb on + strand at 3281.794 kb on - strand at 3281.801 kb on + strand at 3281.802 kb on - strand at 3281.888 kb on + strand, within LU632_RS17430 at 3281.888 kb on + strand, within LU632_RS17430 at 3281.888 kb on + strand, within LU632_RS17430 at 3281.889 kb on - strand, within LU632_RS17430 at 3282.003 kb on + strand, within LU632_RS17430 at 3282.232 kb on - strand, within LU632_RS17430 at 3282.257 kb on - strand, within LU632_RS17430 at 3282.312 kb on - strand, within LU632_RS17430 at 3282.443 kb on + strand at 3282.444 kb on - strand at 3282.444 kb on - strand at 3282.444 kb on - strand at 3282.481 kb on + strand at 3282.514 kb on - strand at 3282.580 kb on + strand, within LU632_RS17435 at 3282.583 kb on + strand, within LU632_RS17435 at 3282.584 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435 at 3282.669 kb on - strand, within LU632_RS17435
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 3,274,260 - LU632_RS17420 0.27 -0.0 3,275,481 - +0.1 3,275,849 + LU632_RS17425 0.11 +0.2 3,275,999 + LU632_RS17425 0.14 +0.1 3,276,151 + LU632_RS17425 0.16 +0.8 3,277,721 - LU632_RS17425 0.40 +0.3 3,277,881 - LU632_RS17425 0.42 -0.5 3,277,986 + LU632_RS17425 0.44 -0.1 3,278,158 - LU632_RS17425 0.46 -0.4 3,278,246 + LU632_RS17425 0.48 -0.1 3,278,326 + LU632_RS17425 0.49 -0.2 3,278,393 + LU632_RS17425 0.50 +0.1 3,278,394 - LU632_RS17425 0.50 +0.8 3,278,585 + LU632_RS17425 0.53 -0.0 3,278,589 + LU632_RS17425 0.53 +0.1 3,278,960 + LU632_RS17425 0.58 +1.0 3,279,338 - LU632_RS17425 0.64 +0.4 3,279,750 - LU632_RS17425 0.70 +0.1 3,279,759 - LU632_RS17425 0.70 -0.1 3,280,299 + LU632_RS17425 0.79 +0.8 3,280,434 - LU632_RS17425 0.81 +0.8 3,280,434 - LU632_RS17425 0.81 -0.8 3,280,436 - LU632_RS17425 0.81 +0.1 3,280,436 - LU632_RS17425 0.81 +0.7 3,280,436 - LU632_RS17425 0.81 +0.3 3,281,793 + +0.1 3,281,794 - -0.9 3,281,801 + +0.0 3,281,802 - -0.4 3,281,888 + LU632_RS17430 0.17 -0.2 3,281,888 + LU632_RS17430 0.17 -1.3 3,281,888 + LU632_RS17430 0.17 -0.8 3,281,889 - LU632_RS17430 0.17 -0.2 3,282,003 + LU632_RS17430 0.35 +0.2 3,282,232 - LU632_RS17430 0.71 +0.1 3,282,257 - LU632_RS17430 0.74 +0.2 3,282,312 - LU632_RS17430 0.83 -0.0 3,282,443 + -0.2 3,282,444 - +0.0 3,282,444 - +0.3 3,282,444 - -0.5 3,282,481 + -0.1 3,282,514 - +0.5 3,282,580 + LU632_RS17435 0.24 +1.9 3,282,583 + LU632_RS17435 0.25 +0.2 3,282,584 - LU632_RS17435 0.25 +0.2 3,282,669 - LU632_RS17435 0.55 +0.1 3,282,669 - LU632_RS17435 0.55 +0.6 3,282,669 - LU632_RS17435 0.55 +2.1 3,282,669 - LU632_RS17435 0.55 -1.0 3,282,669 - LU632_RS17435 0.55 +0.0
Or see this region's nucleotide sequence